Guide to the Human Genome
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Name: PVR Sequence: fasta or formatted (417aa) NCBI GI: 209413726
Description:

poliovirus receptor isoform alpha

Referenced in:

Additional Immunoglobulin-related Receptors
Viral Receptors

Other entries for this name:
alt prot [372aa] poliovirus receptor isoform beta
alt prot [364aa] poliovirus receptor isoform gamma
alt prot [392aa] poliovirus receptor isoform delta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         30           3
 C cysteine            2.2          9           1
 D aspartate           2.4         10           1
 E glutamate           5.3         22           1
 F phenylalanine       2.9         12           1
 G glycine             7.7         32           2
 H histidine           2.4         10           1
 I isoleucine          3.4         14           2
 K lysine              2.2          9           1
 L leucine            10.1         42           3
 M methionine          1.9          8           1
 N asparagine          4.3         18           2
 P proline             7.7         32           3
 Q glutamine           5.0         21           1
 R arginine            4.3         18           1
 S serine              9.1         38           3
 T threonine           7.4         31           2
 V valine              9.6         40           3
 W tryptophan          2.4         10           1
 Y tyrosine            2.6         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poliovirus receptor isoform alpha 
PVR                   0.928   poliovirus receptor isoform delta 
PVR                   0.861   poliovirus receptor isoform beta 
PVR                   0.818   poliovirus receptor isoform gamma 
PVRL2                 0.376   poliovirus receptor related 2 isoform alpha precursor...
PVRL2                 0.376   poliovirus receptor related 2 isoform delta precurs...
PVRL1                 0.192   poliovirus receptor-related 1 isoform 1 
PVRL1                 0.191   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.180   poliovirus receptor-related 1 isoform 3 
PVRL3                 0.146   poliovirus receptor-related 3 
PVRL4                 0.127   poliovirus receptor-related 4 
CADM3                 0.086   cell adhesion molecule 3 isoform 2 
CADM3                 0.083   cell adhesion molecule 3 isoform 1 
CADM1                 0.080   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.071   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM2                 0.063   immunoglobulin superfamily, member 4D 
KIRREL2               0.057   kin of IRRE-like 2 isoform c 
KIRREL2               0.057   kin of IRRE-like 2 isoform a 
CADM4                 0.054   cell adhesion molecule 4 
KIRREL2               0.053   kin of IRRE-like 2 isoform b 
TAPBPL                0.043   TAP binding protein-like 
BTN1A1                0.042   butyrophilin, subfamily 1, member A1 
DSCAM                 0.037   Down syndrome cell adhesion molecule isoform CHD2-42...
KIRREL                0.037   kin of IRRE like 
KIRREL3               0.036   kin of IRRE like 3 isoform 2 
KIRREL3               0.036   kin of IRRE like 3 isoform 1 
CD200                 0.035   CD200 antigen isoform b 
CD200                 0.035   CD200 antigen isoform a precursor 
HSPG2                 0.033   heparan sulfate proteoglycan 2 
CD276                 0.031   CD276 antigen isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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