Guide to the Human Genome
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Name: LOXL3 Sequence: fasta or formatted (753aa) NCBI GI: 14211943
Description:

lysyl oxidase-like 3 precursor

Referenced in:

Additional Membrane Functions
Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         55           2
 C cysteine            5.0         38           1
 D aspartate           4.6         35           3
 E glutamate           6.6         50           2
 F phenylalanine       2.7         20           1
 G glycine            10.6         80           3
 H histidine           4.6         35           2
 I isoleucine          3.9         29           2
 K lysine              3.1         23           2
 L leucine             7.6         57           3
 M methionine          1.2          9           1
 N asparagine          3.2         24           2
 P proline             4.1         31           1
 Q glutamine           4.2         32           3
 R arginine            6.9         52           2
 S serine              7.4         56           2
 T threonine           5.0         38           1
 V valine              6.4         48           2
 W tryptophan          3.1         23           1
 Y tyrosine            2.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysyl oxidase-like 3 precursor 
LOXL2                 0.556   lysyl oxidase-like 2 precursor 
LOXL4                 0.533   lysyl oxidase-like 4 precursor 
LOC100291777          0.151   PREDICTED: similar to DMBT1 isoform 1 
DMBT1                 0.151   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.151   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.151   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.149   PREDICTED: similar to DMBT1 isoform 2 
LOX                   0.127   lysyl oxidase preproprotein 
CD163L1               0.127   scavenger receptor cysteine-rich type 1 precursor [H...
SRCRB4D               0.125   scavenger receptor cysteine rich domain containing, ...
LOXL1                 0.124   lysyl oxidase-like 1 preproprotein 
CD163                 0.118   CD163 antigen isoform b 
CD163                 0.118   CD163 antigen isoform a 
PRSS12                0.117   neurotrypsin precursor 
LOC284297             0.108   hypothetical protein LOC284297 
CD5L                  0.091   CD5 molecule-like 
LOC651581             0.085   PREDICTED: hypothetical protein 
CD6                   0.069   CD6 molecule 
MSR1                  0.053   macrophage scavenger receptor 1 isoform type 1 [Homo...
MARCO                 0.048   macrophage receptor with collagenous structure 
LGALS3BP              0.047   galectin 3 binding protein 
SCARA5                0.047   scavenger receptor class A, member 5 
HHIPL1                0.047   HHIP-like protein 1 isoform a 
MSR1                  0.019   macrophage scavenger receptor 1 isoform type 3 [Homo...
CD5                   0.012   CD5 molecule 
CFI                   0.009   complement factor I preproprotein 
TMPRSS3               0.007   transmembrane protease, serine 3 isoform 1 
TMPRSS3               0.007   transmembrane protease, serine 3 isoform 3 
LOC100290738          0.006   PREDICTED: hypothetical protein XP_002348171 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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