Guide to the Human Genome
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Name: TMPRSS3 Sequence: fasta or formatted (344aa) NCBI GI: 14602457
Description:

transmembrane protease, serine 3 isoform 3

Referenced in:

Serine Proteases

Other entries for this name:
alt prot [454aa] transmembrane protease, serine 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         29           2
 C cysteine            4.1         14           1
 D aspartate           5.8         20           2
 E glutamate           3.5         12           2
 F phenylalanine       4.4         15           2
 G glycine             8.1         28           2
 H histidine           3.2         11           2
 I isoleucine          6.1         21           2
 K lysine              4.1         14           1
 L leucine            12.2         42           2
 M methionine          1.2          4           1
 N asparagine          2.3          8           1
 P proline             4.9         17           2
 Q glutamine           3.8         13           1
 R arginine            3.8         13           2
 S serine              9.0         31           2
 T threonine           2.9         10           1
 V valine              7.3         25           2
 W tryptophan          1.7          6           1
 Y tyrosine            3.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protease, serine 3 isoform 3 
TMPRSS3               0.925   transmembrane protease, serine 3 isoform 1 
TMPRSS2               0.236   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.236   transmembrane protease, serine 2 isoform 2 
TMPRSS13              0.172   transmembrane protease, serine 13 
TMPRSS4               0.164   transmembrane protease, serine 4 isoform 1 
TMPRSS4               0.158   transmembrane protease, serine 4 isoform 3 
TMPRSS5               0.144   transmembrane protease, serine 5 
PRSS7                 0.138   enterokinase precursor 
HPN                   0.125   hepsin 
HPN                   0.125   hepsin 
CORIN                 0.122   corin 
TESSP1                0.103   testis-specific serine protease 1 
TMPRSS11B             0.100   transmembrane protease, serine 11B 
ESSPL                 0.098   epidermis-specific serine protease-like protein [Ho...
TMPRSS11A             0.097   transmembrane protease, serine 11A isoform 2 
KLKB1                 0.097   plasma kallikrein B1 precursor 
PRSS12                0.094   neurotrypsin precursor 
OVCH1                 0.094   ovochymase 1 
TMPRSS11A             0.092   transmembrane protease, serine 11A isoform 1 
PRSS33                0.089   protease, serine, 33 
TMPRSS11E             0.089   transmembrane protease, serine 11E 
TMPRSS11E2            0.089   transmembrane protease, serine 11E2 
PRSS8                 0.088   prostasin preproprotein 
TMPRSS11D             0.087   transmembrane protease, serine 11D 
TMPRSS7               0.085   transmembrane protease, serine 7 
F11                   0.084   coagulation factor XI precursor 
PRSS21                0.084   testisin isoform 2 
TMPRSS6               0.084   transmembrane protease, serine 6 
PRSS36                0.084   protease, serine, 36 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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