Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290738 Sequence: fasta or formatted (146aa) NCBI GI: 239752583
Description:

PREDICTED: hypothetical protein XP_002348171

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         12           2
 C cysteine            3.4          5           1
 D aspartate           4.1          6           1
 E glutamate           2.7          4           1
 F phenylalanine       3.4          5           1
 G glycine            10.3         15           3
 H histidine           0.7          1           1
 I isoleucine          2.7          4           1
 K lysine              3.4          5           1
 L leucine             8.9         13           1
 M methionine          3.4          5           1
 N asparagine          3.4          5           1
 P proline             2.1          3           1
 Q glutamine           4.8          7           1
 R arginine            5.5          8           1
 S serine             11.6         17           2
 T threonine           4.8          7           1
 V valine              9.6         14           1
 W tryptophan          3.4          5           1
 Y tyrosine            3.4          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          1.000   PREDICTED: hypothetical protein XP_002343513 
LOC100290036          0.710   PREDICTED: hypothetical protein XP_002347522 
LOC100289290          0.707   PREDICTED: hypothetical protein XP_002343511 
LOC652494             0.699   PREDICTED: similar to hCG2042717 
LOC100291056          0.692   PREDICTED: hypothetical protein XP_002347527 
LOC100293270          0.692   PREDICTED: similar to hCG2042717 
LOC100290320          0.692   PREDICTED: hypothetical protein XP_002347525 
LOC100293211          0.681   PREDICTED: similar to hCG2042717 
LOC100132941          0.674   PREDICTED: similar to Ig heavy chain 
LOC100291190          0.667   PREDICTED: hypothetical protein XP_002347529 
LOC100132941          0.652   PREDICTED: similar to Ig heavy chain 
LOC100290115          0.645   PREDICTED: hypothetical protein XP_002347523 
LOC100292999          0.627   PREDICTED: hypothetical protein 
LOC401847             0.620   PREDICTED: similar to hCG1793095 
LOC646057             0.601   PREDICTED: similar to hCG2003024 
LOC646057             0.598   PREDICTED: similar to hCG2003024 
LOC646057             0.598   PREDICTED: similar to hCG2003024 
LOC100290146          0.533   PREDICTED: hypothetical protein XP_002347524 
LOC100292483          0.370   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.370   PREDICTED: hypothetical protein XP_002347494 
LOC100130811          0.366   PREDICTED: similar to hCG2038921 
LOC100130811          0.366   PREDICTED: similar to hCG2038921 
LOC100133862          0.359   PREDICTED: similar to hCG1773549 
LOC100290415          0.344   PREDICTED: hypothetical protein XP_002347493 
LOC100292611          0.337   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100292858          0.337   PREDICTED: similar to hCG2029977 
LOC100290528          0.337   PREDICTED: hypothetical protein XP_002347495 
LOC100289944          0.330   PREDICTED: hypothetical protein XP_002347520 
LOC100134397          0.319   PREDICTED: similar to hCG1812074 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press