Guide to the Human Genome
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Name: CD163 Sequence: fasta or formatted (1156aa) NCBI GI: 44662834
Description:

CD163 antigen isoform a

Referenced in:

Macrophages and Monocytes
Additional Host Defense Functions
Additional Membrane Functions

Other entries for this name:
alt prot [1121aa] CD163 antigen isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         74           2
 C cysteine            6.4         74           1
 D aspartate           5.3         61           2
 E glutamate           6.7         78           2
 F phenylalanine       2.4         28           2
 G glycine            11.2        129           3
 H histidine           3.4         39           2
 I isoleucine          4.1         47           1
 K lysine              4.2         48           2
 L leucine             7.4         85           3
 M methionine          1.4         16           1
 N asparagine          4.2         48           2
 P proline             2.8         32           1
 Q glutamine           4.0         46           2
 R arginine            4.9         57           2
 S serine              9.8        113           3
 T threonine           4.7         54           2
 V valine              6.7         77           2
 W tryptophan          3.5         41           1
 Y tyrosine            0.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD163 antigen isoform a 
CD163                 0.968   CD163 antigen isoform b 
CD163L1               0.532   scavenger receptor cysteine-rich type 1 precursor [H...
DMBT1                 0.359   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.359   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.313   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.311   PREDICTED: similar to DMBT1 isoform 2 
LOC100291777          0.285   PREDICTED: similar to DMBT1 isoform 1 
LOC284297             0.134   hypothetical protein LOC284297 
SRCRB4D               0.128   scavenger receptor cysteine rich domain containing, ...
PRSS12                0.125   neurotrypsin precursor 
CD5L                  0.096   CD5 molecule-like 
LOC651581             0.094   PREDICTED: hypothetical protein 
LOXL2                 0.077   lysyl oxidase-like 2 precursor 
LOXL4                 0.077   lysyl oxidase-like 4 precursor 
LOXL3                 0.077   lysyl oxidase-like 3 precursor 
CD6                   0.072   CD6 molecule 
LGALS3BP              0.045   galectin 3 binding protein 
MSR1                  0.040   macrophage scavenger receptor 1 isoform type 1 [Homo...
SCARA5                0.039   scavenger receptor class A, member 5 
HHIPL1                0.036   HHIP-like protein 1 isoform a 
MARCO                 0.035   macrophage receptor with collagenous structure 
CD5                   0.019   CD5 molecule 
MSR1                  0.016   macrophage scavenger receptor 1 isoform type 3 [Homo...
ODZ3                  0.007   odz, odd Oz/ten-m homolog 3 
CFI                   0.007   complement factor I preproprotein 
TMPRSS3               0.005   transmembrane protease, serine 3 isoform 1 
TMPRSS3               0.005   transmembrane protease, serine 3 isoform 3 
PRSS7                 0.005   enterokinase precursor 
RNF43                 0.004   ring finger protein 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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