Guide to the Human Genome
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Name: LOC651581 Sequence: fasta or formatted (343aa) NCBI GI: 239752563
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         24           2
 C cysteine            6.4         22           1
 D aspartate           5.5         19           2
 E glutamate           2.9         10           1
 F phenylalanine       2.3          8           1
 G glycine            12.5         43           2
 H histidine           2.9         10           2
 I isoleucine          2.0          7           1
 K lysine              0.3          1           1
 L leucine             7.0         24           1
 M methionine          2.3          8           2
 N asparagine          4.4         15           2
 P proline             7.6         26           2
 Q glutamine           3.5         12           1
 R arginine            6.7         23           2
 S serine             10.5         36           2
 T threonine           3.2         11           2
 V valine              7.0         24           2
 W tryptophan          3.8         13           1
 Y tyrosine            2.0          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291777          0.643   PREDICTED: similar to DMBT1 isoform 2 
LOC100291777          0.626   PREDICTED: similar to DMBT1 isoform 1 
DMBT1                 0.616   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.616   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.616   deleted in malignant brain tumors 1 isoform a precu...
SRCRB4D               0.332   scavenger receptor cysteine rich domain containing, ...
LOC284297             0.329   hypothetical protein LOC284297 
CD163                 0.316   CD163 antigen isoform b 
CD163                 0.316   CD163 antigen isoform a 
CD163L1               0.288   scavenger receptor cysteine-rich type 1 precursor [H...
PRSS12                0.255   neurotrypsin precursor 
CD6                   0.229   CD6 molecule 
CD5L                  0.225   CD5 molecule-like 
LOXL3                 0.185   lysyl oxidase-like 3 precursor 
LOXL2                 0.180   lysyl oxidase-like 2 precursor 
LOXL4                 0.160   lysyl oxidase-like 4 precursor 
LGALS3BP              0.148   galectin 3 binding protein 
HHIPL1                0.125   HHIP-like protein 1 isoform a 
SCARA5                0.119   scavenger receptor class A, member 5 
MARCO                 0.117   macrophage receptor with collagenous structure 
MSR1                  0.107   macrophage scavenger receptor 1 isoform type 1 [Homo...
CD5                   0.048   CD5 molecule 
MSR1                  0.027   macrophage scavenger receptor 1 isoform type 3 [Homo...
PRSS7                 0.023   enterokinase precursor 
TMPRSS2               0.016   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.016   transmembrane protease, serine 2 isoform 2 
TMPRSS3               0.015   transmembrane protease, serine 3 isoform 1 
TMPRSS3               0.015   transmembrane protease, serine 3 isoform 3 
CFI                   0.011   complement factor I preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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