Guide to the Human Genome
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Name: CD5L Sequence: fasta or formatted (347aa) NCBI GI: 5174411
Description:

CD5 molecule-like

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         17           2
 C cysteine            7.8         27           1
 D aspartate           6.3         22           2
 E glutamate           7.8         27           2
 F phenylalanine       2.0          7           1
 G glycine            11.2         39           2
 H histidine           2.9         10           1
 I isoleucine          2.3          8           1
 K lysine              4.6         16           1
 L leucine             7.8         27           2
 M methionine          0.6          2           1
 N asparagine          2.3          8           1
 P proline             4.3         15           2
 Q glutamine           5.5         19           1
 R arginine            5.8         20           1
 S serine              7.2         25           2
 T threonine           3.7         13           1
 V valine              8.4         29           2
 W tryptophan          3.2         11           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD5 molecule-like 
DMBT1                 0.344   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.342   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.336   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.334   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.334   PREDICTED: similar to DMBT1 isoform 2 
CD163L1               0.329   scavenger receptor cysteine-rich type 1 precursor [H...
LOC284297             0.323   hypothetical protein LOC284297 
CD163                 0.322   CD163 antigen isoform b 
CD163                 0.322   CD163 antigen isoform a 
SRCRB4D               0.318   scavenger receptor cysteine rich domain containing, ...
PRSS12                0.299   neurotrypsin precursor 
CD6                   0.227   CD6 molecule 
LOC651581             0.225   PREDICTED: hypothetical protein 
LOXL3                 0.197   lysyl oxidase-like 3 precursor 
LOXL4                 0.190   lysyl oxidase-like 4 precursor 
LOXL2                 0.186   lysyl oxidase-like 2 precursor 
MARCO                 0.103   macrophage receptor with collagenous structure 
SCARA5                0.103   scavenger receptor class A, member 5 
MSR1                  0.101   macrophage scavenger receptor 1 isoform type 1 [Homo...
LGALS3BP              0.082   galectin 3 binding protein 
HHIPL1                0.081   HHIP-like protein 1 isoform a 
CD5                   0.041   CD5 molecule 
MSR1                  0.036   macrophage scavenger receptor 1 isoform type 3 [Homo...
CFI                   0.026   complement factor I preproprotein 
PRSS7                 0.016   enterokinase precursor 
CORIN                 0.014   corin 
ODZ1                  0.014   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.014   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.014   odz, odd Oz/ten-m homolog 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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