Guide to the Human Genome
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Name: LOC100291777 Sequence: fasta or formatted (1788aa) NCBI GI: 239755388
Description:

PREDICTED: similar to DMBT1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1662aa} PREDICTED: similar to DMBT1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9        106           2
 C cysteine            5.1         92           1
 D aspartate           6.2        111           2
 E glutamate           3.7         67           3
 F phenylalanine       2.6         46           1
 G glycine            10.1        181           2
 H histidine           2.7         49           2
 I isoleucine          3.5         62           2
 K lysine              0.6         11           1
 L leucine             7.4        132           3
 M methionine          0.8         14           1
 N asparagine          5.3         95           2
 P proline             5.2         93           2
 Q glutamine           3.2         57           1
 R arginine            6.2        110           2
 S serine             11.7        210           3
 T threonine           5.9        106           5
 V valine              6.9        124           2
 W tryptophan          3.5         62           2
 Y tyrosine            3.4         60           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.980   deleted in malignant brain tumors 1 isoform a precu...
DMBT1                 0.894   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.894   deleted in malignant brain tumors 1 isoform b precu...
LOC100291777          0.827   PREDICTED: similar to DMBT1 isoform 1 
CD163L1               0.218   scavenger receptor cysteine-rich type 1 precursor [H...
CD163                 0.199   CD163 antigen isoform b 
CD163                 0.199   CD163 antigen isoform a 
SRCRB4D               0.128   scavenger receptor cysteine rich domain containing, ...
LOC651581             0.123   PREDICTED: hypothetical protein 
LOC284297             0.120   hypothetical protein LOC284297 
PRSS12                0.089   neurotrypsin precursor 
CUZD1                 0.071   CUB and zona pellucida-like domains 1 
CD5L                  0.064   CD5 molecule-like 
LOXL4                 0.064   lysyl oxidase-like 4 precursor 
LOXL3                 0.062   lysyl oxidase-like 3 precursor 
LOXL2                 0.061   lysyl oxidase-like 2 precursor 
CD6                   0.058   CD6 molecule 
TLL1                  0.033   tolloid-like 1 
TLL2                  0.031   tolloid-like 2 
BMP1                  0.030   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.030   bone morphogenetic protein 1 isoform 2 precursor [Hom...
BMP1                  0.030   bone morphogenetic protein 1 isoform 3 precursor [Hom...
CDCP2                 0.029   CUB domain containing protein 2 
LGALS3BP              0.029   galectin 3 binding protein 
CUBN                  0.026   cubilin 
HHIPL1                0.025   HHIP-like protein 1 isoform a 
SCARA5                0.023   scavenger receptor class A, member 5 
MARCO                 0.022   macrophage receptor with collagenous structure 
MSR1                  0.021   macrophage scavenger receptor 1 isoform type 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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