Guide to the Human Genome
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Name: CD163L1 Sequence: fasta or formatted (1453aa) NCBI GI: 50659091
Description:

scavenger receptor cysteine-rich type 1 precursor

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         83           3
 C cysteine            7.2        104           3
 D aspartate           6.7         97           2
 E glutamate           5.4         78           2
 F phenylalanine       2.6         38           1
 G glycine            10.5        153           2
 H histidine           3.6         53           2
 I isoleucine          3.9         56           2
 K lysine              2.8         40           1
 L leucine             8.7        126           4
 M methionine          1.2         17           2
 N asparagine          4.5         65           2
 P proline             2.5         36           2
 Q glutamine           3.2         46           2
 R arginine            5.7         83           3
 S serine              8.7        127           2
 T threonine           4.7         69           2
 V valine              7.5        109           2
 W tryptophan          3.9         57           2
 Y tyrosine            1.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scavenger receptor cysteine-rich type 1 precursor [H... 
CD163                 0.417   CD163 antigen isoform a 
CD163                 0.416   CD163 antigen isoform b 
DMBT1                 0.348   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.346   deleted in malignant brain tumors 1 isoform b precu...
LOC100291777          0.267   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.267   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.232   PREDICTED: similar to DMBT1 isoform 1 
LOC284297             0.097   hypothetical protein LOC284297 
SRCRB4D               0.096   scavenger receptor cysteine rich domain containing, ...
PRSS12                0.090   neurotrypsin precursor 
CD5L                  0.077   CD5 molecule-like 
LOC651581             0.067   PREDICTED: hypothetical protein 
LOXL3                 0.065   lysyl oxidase-like 3 precursor 
LOXL4                 0.063   lysyl oxidase-like 4 precursor 
LOXL2                 0.058   lysyl oxidase-like 2 precursor 
CD6                   0.056   CD6 molecule 
LGALS3BP              0.031   galectin 3 binding protein 
MSR1                  0.029   macrophage scavenger receptor 1 isoform type 1 [Homo...
MARCO                 0.029   macrophage receptor with collagenous structure 
SCARA5                0.029   scavenger receptor class A, member 5 
HHIPL1                0.027   HHIP-like protein 1 isoform a 
CD5                   0.018   CD5 molecule 
MSR1                  0.010   macrophage scavenger receptor 1 isoform type 3 [Homo...
CFI                   0.008   complement factor I preproprotein 
PRSS7                 0.005   enterokinase precursor 
TMPRSS3               0.005   transmembrane protease, serine 3 isoform 1 
TMPRSS3               0.005   transmembrane protease, serine 3 isoform 3 
TMPRSS2               0.004   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.004   transmembrane protease, serine 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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