Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMPRSS3 Sequence: fasta or formatted (454aa) NCBI GI: 13173471
Description:

transmembrane protease, serine 3 isoform 1

Referenced in:

Serine Proteases

Other entries for this name:
alt prot [344aa] transmembrane protease, serine 3 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         34           2
 C cysteine            4.4         20           1
 D aspartate           5.9         27           2
 E glutamate           4.0         18           2
 F phenylalanine       3.5         16           2
 G glycine             9.3         42           2
 H histidine           3.1         14           2
 I isoleucine          5.9         27           2
 K lysine              4.2         19           1
 L leucine             9.9         45           2
 M methionine          1.5          7           1
 N asparagine          3.1         14           1
 P proline             5.3         24           2
 Q glutamine           3.3         15           1
 R arginine            4.0         18           2
 S serine              8.4         38           2
 T threonine           3.5         16           1
 V valine              7.9         36           2
 W tryptophan          2.2         10           1
 Y tyrosine            3.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protease, serine 3 isoform 1 
TMPRSS3               0.684   transmembrane protease, serine 3 isoform 3 
TMPRSS2               0.334   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.334   transmembrane protease, serine 2 isoform 2 
TMPRSS13              0.274   transmembrane protease, serine 13 
TMPRSS5               0.266   transmembrane protease, serine 5 
HPN                   0.243   hepsin 
HPN                   0.243   hepsin 
PRSS7                 0.240   enterokinase precursor 
TMPRSS4               0.236   transmembrane protease, serine 4 isoform 1 
TMPRSS4               0.232   transmembrane protease, serine 4 isoform 3 
TMPRSS11D             0.201   transmembrane protease, serine 11D 
KLKB1                 0.200   plasma kallikrein B1 precursor 
TMPRSS11B             0.192   transmembrane protease, serine 11B 
TESSP1                0.187   testis-specific serine protease 1 
TMPRSS11F             0.184   transmembrane protease, serine 11F 
ACR                   0.183   acrosin precursor 
CORIN                 0.182   corin 
TMPRSS11E             0.182   transmembrane protease, serine 11E 
TMPRSS11E2            0.182   transmembrane protease, serine 11E2 
TMPRSS7               0.182   transmembrane protease, serine 7 
PLG                   0.181   plasminogen 
PRSS21                0.181   testisin isoform 2 
PRSS21                0.181   testisin isoform 1 
TMPRSS9               0.180   transmembrane protease, serine 9 
ST14                  0.179   matriptase 
F11                   0.179   coagulation factor XI precursor 
TMPRSS6               0.178   transmembrane protease, serine 6 
PRSS36                0.178   protease, serine, 36 
PRSS8                 0.177   prostasin preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press