Guide to the Human Genome
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Name: DMBT1 Sequence: fasta or formatted (2413aa) NCBI GI: 148539842
Description:

deleted in malignant brain tumors 1 isoform b precursor

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [1785aa] deleted in malignant brain tumors 1 isoform a precursor
alt prot [2403aa] deleted in malignant brain tumors 1 isoform c precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0        145           2
 C cysteine            5.4        131           1
 D aspartate           6.5        156           2
 E glutamate           3.6         87           3
 F phenylalanine       2.1         51           1
 G glycine            10.7        259           2
 H histidine           3.1         75           2
 I isoleucine          3.0         73           2
 K lysine              0.4         10           1
 L leucine             7.1        172           3
 M methionine          0.6         15           1
 N asparagine          5.1        124           2
 P proline             5.3        128           2
 Q glutamine           3.2         78           1
 R arginine            6.0        144           2
 S serine             12.0        290           3
 T threonine           5.8        140           5
 V valine              7.1        172           2
 W tryptophan          3.7         89           2
 Y tyrosine            3.1         74           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   deleted in malignant brain tumors 1 isoform b precu... 
DMBT1                 0.994   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.668   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.657   PREDICTED: similar to DMBT1 isoform 2 
LOC100291777          0.614   PREDICTED: similar to DMBT1 isoform 1 
CD163L1               0.208   scavenger receptor cysteine-rich type 1 precursor [H...
CD163                 0.169   CD163 antigen isoform b 
CD163                 0.169   CD163 antigen isoform a 
SRCRB4D               0.095   scavenger receptor cysteine rich domain containing, ...
LOC284297             0.090   hypothetical protein LOC284297 
LOC651581             0.087   PREDICTED: hypothetical protein 
PRSS12                0.067   neurotrypsin precursor 
CUZD1                 0.052   CUB and zona pellucida-like domains 1 
CD5L                  0.049   CD5 molecule-like 
LOXL4                 0.048   lysyl oxidase-like 4 precursor 
LOXL2                 0.047   lysyl oxidase-like 2 precursor 
LOXL3                 0.046   lysyl oxidase-like 3 precursor 
CD6                   0.043   CD6 molecule 
TLL1                  0.024   tolloid-like 1 
TLL2                  0.023   tolloid-like 2 
BMP1                  0.022   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.022   bone morphogenetic protein 1 isoform 2 precursor [Hom...
BMP1                  0.022   bone morphogenetic protein 1 isoform 3 precursor [Hom...
CDCP2                 0.021   CUB domain containing protein 2 
LGALS3BP              0.021   galectin 3 binding protein 
CUBN                  0.019   cubilin 
HHIPL1                0.019   HHIP-like protein 1 isoform a 
SCARA5                0.017   scavenger receptor class A, member 5 
MARCO                 0.017   macrophage receptor with collagenous structure 
MSR1                  0.015   macrophage scavenger receptor 1 isoform type 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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