Guide to the Human Genome
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Name: LOX Sequence: fasta or formatted (417aa) NCBI GI: 20149540
Description:

lysyl oxidase preproprotein

Referenced in:

Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         42           3
 C cysteine            2.9         12           1
 D aspartate           6.2         26           2
 E glutamate           3.1         13           2
 F phenylalanine       2.2          9           1
 G glycine             7.2         30           2
 H histidine           3.1         13           2
 I isoleucine          2.4         10           1
 K lysine              1.4          6           1
 L leucine             6.2         26           3
 M methionine          1.2          5           1
 N asparagine          4.1         17           2
 P proline             8.4         35           2
 Q glutamine           5.8         24           3
 R arginine            8.9         37           3
 S serine              7.0         29           2
 T threonine           5.5         23           1
 V valine              4.8         20           2
 W tryptophan          1.7          7           1
 Y tyrosine            7.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysyl oxidase preproprotein 
LOXL1                 0.383   lysyl oxidase-like 1 preproprotein 
LOXL3                 0.232   lysyl oxidase-like 3 precursor 
LOXL4                 0.226   lysyl oxidase-like 4 precursor 
LOXL2                 0.226   lysyl oxidase-like 2 precursor 
LDB3                  0.016   LIM domain binding 3 isoform 1 
LOC100133263          0.016   PREDICTED: hypothetical protein 
LOC100133263          0.016   PREDICTED: hypothetical protein 
LOC100133263          0.016   PREDICTED: hypothetical protein 
LOC100293375          0.015   PREDICTED: hypothetical protein 
HIC1                  0.014   hypermethylated in cancer 1 isoform 2 
HIC1                  0.014   hypermethylated in cancer 1 isoform 1 
CHSY3                 0.014   chondroitin sulfate synthase 3 
TBX2                  0.013   T-box 2 
KDM6B                 0.012   lysine (K)-specific demethylase 6B 
TTBK1                 0.012   tau tubulin kinase 1 
OGFR                  0.010   opioid growth factor receptor 
VWA5B2                0.009   von Willebrand factor A domain containing 5B2 [Homo...
MN1                   0.009   meningioma  1 
KIAA1683              0.009   KIAA1683 isoform a 
SREBF1                0.009   sterol regulatory element binding transcription fact...
SREBF1                0.009   sterol regulatory element binding transcription fact...
LOC100290023          0.009   PREDICTED: hypothetical protein XP_002348147 
KIAA1683              0.009   KIAA1683 isoform c 
KIAA1683              0.009   KIAA1683 isoform b 
RSBN1L                0.009   round spermatid basic protein 1-like 
CRTC1                 0.008   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.008   mucoepidermoid carcinoma translocated 1 isoform 1 [...
AFF1                  0.008   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
PABPC1L               0.008   poly(A)-binding protein, cytoplasmic 1-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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