Guide to the Human Genome
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Name: CD6 Sequence: fasta or formatted (668aa) NCBI GI: 194018748
Description:

CD6 molecule

Referenced in:

Additional Immunoglobulin-related Receptors
T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         58           2
 C cysteine            4.0         27           1
 D aspartate           4.3         29           2
 E glutamate           7.5         50           2
 F phenylalanine       2.4         16           2
 G glycine             7.9         53           3
 H histidine           3.0         20           1
 I isoleucine          2.7         18           1
 K lysine              1.5         10           1
 L leucine             9.0         60           3
 M methionine          1.0          7           1
 N asparagine          3.6         24           2
 P proline             9.6         64           4
 Q glutamine           4.3         29           2
 R arginine            4.6         31           2
 S serine             11.1         74           3
 T threonine           4.6         31           2
 V valine              5.7         38           2
 W tryptophan          2.2         15           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD6 molecule 
DMBT1                 0.167   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.163   deleted in malignant brain tumors 1 isoform b precu...
LOC100291777          0.161   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.159   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.157   PREDICTED: similar to DMBT1 isoform 1 
CD163                 0.128   CD163 antigen isoform b 
CD163                 0.128   CD163 antigen isoform a 
CD163L1               0.126   scavenger receptor cysteine-rich type 1 precursor [H...
LOC651581             0.121   PREDICTED: hypothetical protein 
CD5L                  0.121   CD5 molecule-like 
LOC284297             0.112   hypothetical protein LOC284297 
SRCRB4D               0.108   scavenger receptor cysteine rich domain containing, ...
PRSS12                0.105   neurotrypsin precursor 
LOXL3                 0.080   lysyl oxidase-like 3 precursor 
LOXL4                 0.079   lysyl oxidase-like 4 precursor 
LOXL2                 0.076   lysyl oxidase-like 2 precursor 
LGALS3BP              0.056   galectin 3 binding protein 
HHIPL1                0.046   HHIP-like protein 1 isoform a 
MSR1                  0.044   macrophage scavenger receptor 1 isoform type 1 [Homo...
SCARA5                0.043   scavenger receptor class A, member 5 
MARCO                 0.036   macrophage receptor with collagenous structure 
CD5                   0.027   CD5 molecule 
SS18                  0.012   synovial sarcoma translocation, chromosome 18 isofor...
PRSS7                 0.012   enterokinase precursor 
ARID1A                0.012   AT rich interactive domain 1A isoform a 
ARID1A                0.012   AT rich interactive domain 1A isoform b 
MED15                 0.012   mediator complex subunit 15 isoform b 
RAPH1                 0.011   Ras association and pleckstrin homology domains 1 is...
SOS1                  0.010   son of sevenless homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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