Guide to the Human Genome
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Name: LOXL4 Sequence: fasta or formatted (756aa) NCBI GI: 67782349
Description:

lysyl oxidase-like 4 precursor

Referenced in:

Additional Membrane Functions
Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         48           2
 C cysteine            4.6         35           1
 D aspartate           3.8         29           2
 E glutamate           6.3         48           2
 F phenylalanine       2.6         20           1
 G glycine             9.5         72           3
 H histidine           4.2         32           1
 I isoleucine          2.1         16           1
 K lysine              2.8         21           1
 L leucine             8.6         65           4
 M methionine          1.9         14           1
 N asparagine          4.4         33           2
 P proline             5.3         40           3
 Q glutamine           5.6         42           2
 R arginine            7.4         56           2
 S serine              6.6         50           2
 T threonine           4.2         32           2
 V valine              8.1         61           2
 W tryptophan          2.9         22           1
 Y tyrosine            2.6         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysyl oxidase-like 4 precursor 
LOXL2                 0.534   lysyl oxidase-like 2 precursor 
LOXL3                 0.531   lysyl oxidase-like 3 precursor 
DMBT1                 0.155   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.155   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.154   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.153   PREDICTED: similar to DMBT1 isoform 2 
LOC100291777          0.153   PREDICTED: similar to DMBT1 isoform 1 
SRCRB4D               0.142   scavenger receptor cysteine rich domain containing, ...
PRSS12                0.128   neurotrypsin precursor 
LOX                   0.123   lysyl oxidase preproprotein 
CD163L1               0.123   scavenger receptor cysteine-rich type 1 precursor [H...
LOXL1                 0.119   lysyl oxidase-like 1 preproprotein 
LOC284297             0.118   hypothetical protein LOC284297 
CD163                 0.118   CD163 antigen isoform b 
CD163                 0.118   CD163 antigen isoform a 
CD5L                  0.087   CD5 molecule-like 
LOC651581             0.074   PREDICTED: hypothetical protein 
CD6                   0.069   CD6 molecule 
MSR1                  0.060   macrophage scavenger receptor 1 isoform type 1 [Homo...
LGALS3BP              0.055   galectin 3 binding protein 
SCARA5                0.051   scavenger receptor class A, member 5 
MARCO                 0.047   macrophage receptor with collagenous structure 
HHIPL1                0.047   HHIP-like protein 1 isoform a 
MSR1                  0.020   macrophage scavenger receptor 1 isoform type 3 [Homo...
CFI                   0.011   complement factor I preproprotein 
RADIL                 0.008   Rap GTPase interactor 
CD5                   0.006   CD5 molecule 
LOC730032             0.005   PREDICTED: similar to Rho guanine nucleotide exchan...
TMPRSS4               0.005   transmembrane protease, serine 4 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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