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Search of human proteins with 9966841
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9966841 cell death regulator aven [Homo sapiens]
(362 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9966841 cell death regulator aven [Homo sapiens] 738 0.0
gi|12056465 fibrillarin [Homo sapiens] 59 9e-09
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 57 2e-08
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 57 2e-08
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 57 2e-08
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 57 2e-08
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 57 3e-08
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 57 3e-08
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 57 3e-08
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 56 4e-08
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 56 4e-08
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 56 4e-08
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 56 4e-08
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 56 6e-08
gi|109452587 family with sequence similarity 98, member B isofor... 56 6e-08
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 55 1e-07
gi|195972866 keratin 10 [Homo sapiens] 55 1e-07
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 55 1e-07
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 55 1e-07
gi|119395750 keratin 1 [Homo sapiens] 54 2e-07
gi|55956899 keratin 9 [Homo sapiens] 54 3e-07
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 53 4e-07
gi|28269693 xylosyltransferase I [Homo sapiens] 53 5e-07
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 52 6e-07
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 52 6e-07
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 52 6e-07
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 52 6e-07
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 52 8e-07
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 52 1e-06
gi|29570782 additional sex combs like 1 [Homo sapiens] 52 1e-06
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 738 bits (1906), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MQAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFR 60
MQAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFR
Sbjct: 1 MQAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFR 60
Query: 61 GARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDR 120
GARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDR
Sbjct: 61 GARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDR 120
Query: 121 YQDIEKEVNNESGESQRGTDFSVLLSSAGDSFSQFRFAEEKEWDSEASCPKQNSAFYVDS 180
YQDIEKEVNNESGESQRGTDFSVLLSSAGDSFSQFRFAEEKEWDSEASCPKQNSAFYVDS
Sbjct: 121 YQDIEKEVNNESGESQRGTDFSVLLSSAGDSFSQFRFAEEKEWDSEASCPKQNSAFYVDS 180
Query: 181 ELLVRALQELPLCLRLNVAAELVQGTVPLEVPQVKPKRTDDGKGLGMQLKGPLGPGGRGP 240
ELLVRALQELPLCLRLNVAAELVQGTVPLEVPQVKPKRTDDGKGLGMQLKGPLGPGGRGP
Sbjct: 181 ELLVRALQELPLCLRLNVAAELVQGTVPLEVPQVKPKRTDDGKGLGMQLKGPLGPGGRGP 240
Query: 241 IFELKSVAAGCPVLLGKDNPSPGPSRDSQKPTSPLQSAGDHLEEELDLLLNLDAPIKEGD 300
IFELKSVAAGCPVLLGKDNPSPGPSRDSQKPTSPLQSAGDHLEEELDLLLNLDAPIKEGD
Sbjct: 241 IFELKSVAAGCPVLLGKDNPSPGPSRDSQKPTSPLQSAGDHLEEELDLLLNLDAPIKEGD 300
Query: 301 NILPDQTSQDLKSKEDGEVVQEEEVCAKPSVTEEKNMEPEQPSTSKNVTEEELEDWLDSM 360
NILPDQTSQDLKSKEDGEVVQEEEVCAKPSVTEEKNMEPEQPSTSKNVTEEELEDWLDSM
Sbjct: 301 NILPDQTSQDLKSKEDGEVVQEEEVCAKPSVTEEKNMEPEQPSTSKNVTEEELEDWLDSM 360
Query: 361 IS 362
IS
Sbjct: 361 IS 362
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 58.5 bits (140), Expect = 9e-09
Identities = 40/102 (39%), Positives = 43/102 (42%), Gaps = 19/102 (18%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G RGG G R GRG RGG GGG G GGG RGRGRG G G GG
Sbjct: 13 GGRGGFGDRGGRG-----------------GRGGFGGGRGRGGGFRGRGRGGG--GGGGG 53
Query: 66 RGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQG 107
GGGG G G G G + S E + +G
Sbjct: 54 GGGGGRGGGGFHSGGNRGRGRGGKRGNQSGKNVMVEPHRHEG 95
Score = 57.0 bits (136), Expect = 3e-08
Identities = 35/66 (53%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 4 ERGARGGRGR-RPGRGRPGGDRHSERPGAAAAVARGGGGGGGGD--GGGRRGRGRGRGFR 60
+RG RGGRG GRGR GG R R G GGGG GGG GG RGRGRG G R
Sbjct: 20 DRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRG-GKR 78
Query: 61 GARGGR 66
G + G+
Sbjct: 79 GNQSGK 84
Score = 53.1 bits (126), Expect = 4e-07
Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 28 RPGAAAAVARGGGGGGGGDGGGR-------RGRGRGRGFRG-ARGGRGGGGAPRGSRREP 79
+PG + GG GG GD GGR GRGRG GFRG RGG GGGG G R
Sbjct: 2 KPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGG 61
Query: 80 GGWGAGAS 87
GG+ +G +
Sbjct: 62 GGFHSGGN 69
Score = 46.6 bits (109), Expect = 3e-05
Identities = 35/81 (43%), Positives = 35/81 (43%), Gaps = 21/81 (25%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGG--GGGGGDGGGRRGRGRGRGFRGA 62
RG G RG R GRG GG R RGGG G G G GGG G G
Sbjct: 15 RGGFGDRGGRGGRGGFGGGR-----------GRGGGFRGRGRGGGGGGGG--------GG 55
Query: 63 RGGRGGGGAPRGSRREPGGWG 83
GGRGGGG G R G G
Sbjct: 56 GGGRGGGGFHSGGNRGRGRGG 76
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/128 (38%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 3 AERGARGGRGRR----PGRGR----PGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRG 54
A RG GGRG R P RGR P G + GA RG GG GG +RGRG
Sbjct: 400 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 459
Query: 55 RGRGFRGARGGRGGG-------GAPRGSRREPG---GWGAG--ASAPVEDDSD-AETYGE 101
RG RG RGG GG P RR+ WG+ A P++ D + YG
Sbjct: 460 -SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGY 518
Query: 102 ENDEQGNY 109
ND Q Y
Sbjct: 519 NNDNQEFY 526
Score = 45.4 bits (106), Expect = 8e-05
Identities = 47/190 (24%), Positives = 65/190 (34%), Gaps = 37/190 (19%)
Query: 5 RGARGGRGRRPGRGRP--------------GGDRHSERPGAA--------AAVARGGGGG 42
RG GGRG G G P G D H R G RG GGG
Sbjct: 351 RGRGGGRG---GYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGG 407
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEE 102
GG G RGRG R G GAP G P G G P + + G
Sbjct: 408 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG---PPRGSRGGRGGPAQQQRGRGSRGSR 464
Query: 103 NDEQGNYSKRKIVSNWDRYQDIEKEVNNESG---------ESQRGTDFSVLLSSAGDSFS 153
+ GN ++ +++ ++ NN+ Q+G D+S D+
Sbjct: 465 GNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQE 524
Query: 154 QFRFAEEKEW 163
++ ++W
Sbjct: 525 FYQDTYGQQW 534
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/128 (38%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 3 AERGARGGRGRR----PGRGR----PGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRG 54
A RG GGRG R P RGR P G + GA RG GG GG +RGRG
Sbjct: 501 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 560
Query: 55 RGRGFRGARGGRGGG-------GAPRGSRREPG---GWGAG--ASAPVEDDSD-AETYGE 101
RG RG RGG GG P RR+ WG+ A P++ D + YG
Sbjct: 561 -SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGY 619
Query: 102 ENDEQGNY 109
ND Q Y
Sbjct: 620 NNDNQEFY 627
Score = 45.4 bits (106), Expect = 8e-05
Identities = 47/190 (24%), Positives = 65/190 (34%), Gaps = 37/190 (19%)
Query: 5 RGARGGRGRRPGRGRP--------------GGDRHSERPGAA--------AAVARGGGGG 42
RG GGRG G G P G D H R G RG GGG
Sbjct: 452 RGRGGGRG---GYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGG 508
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEE 102
GG G RGRG R G GAP G P G G P + + G
Sbjct: 509 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG---PPRGSRGGRGGPAQQQRGRGSRGSR 565
Query: 103 NDEQGNYSKRKIVSNWDRYQDIEKEVNNESG---------ESQRGTDFSVLLSSAGDSFS 153
+ GN ++ +++ ++ NN+ Q+G D+S D+
Sbjct: 566 GNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQE 625
Query: 154 QFRFAEEKEW 163
++ ++W
Sbjct: 626 FYQDTYGQQW 635
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/128 (38%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 3 AERGARGGRGRR----PGRGR----PGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRG 54
A RG GGRG R P RGR P G + GA RG GG GG +RGRG
Sbjct: 397 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 456
Query: 55 RGRGFRGARGGRGGG-------GAPRGSRREPG---GWGAG--ASAPVEDDSD-AETYGE 101
RG RG RGG GG P RR+ WG+ A P++ D + YG
Sbjct: 457 -SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGY 515
Query: 102 ENDEQGNY 109
ND Q Y
Sbjct: 516 NNDNQEFY 523
Score = 45.4 bits (106), Expect = 8e-05
Identities = 47/190 (24%), Positives = 65/190 (34%), Gaps = 37/190 (19%)
Query: 5 RGARGGRGRRPGRGRP--------------GGDRHSERPGAA--------AAVARGGGGG 42
RG GGRG G G P G D H R G RG GGG
Sbjct: 348 RGRGGGRG---GYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGG 404
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEE 102
GG G RGRG R G GAP G P G G P + + G
Sbjct: 405 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG---PPRGSRGGRGGPAQQQRGRGSRGSR 461
Query: 103 NDEQGNYSKRKIVSNWDRYQDIEKEVNNESG---------ESQRGTDFSVLLSSAGDSFS 153
+ GN ++ +++ ++ NN+ Q+G D+S D+
Sbjct: 462 GNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQE 521
Query: 154 QFRFAEEKEW 163
++ ++W
Sbjct: 522 FYQDTYGQQW 531
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/128 (38%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 3 AERGARGGRGRR----PGRGR----PGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRG 54
A RG GGRG R P RGR P G + GA RG GG GG +RGRG
Sbjct: 498 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 557
Query: 55 RGRGFRGARGGRGGG-------GAPRGSRREPG---GWGAG--ASAPVEDDSD-AETYGE 101
RG RG RGG GG P RR+ WG+ A P++ D + YG
Sbjct: 558 -SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGY 616
Query: 102 ENDEQGNY 109
ND Q Y
Sbjct: 617 NNDNQEFY 624
Score = 45.4 bits (106), Expect = 8e-05
Identities = 47/190 (24%), Positives = 65/190 (34%), Gaps = 37/190 (19%)
Query: 5 RGARGGRGRRPGRGRP--------------GGDRHSERPGAA--------AAVARGGGGG 42
RG GGRG G G P G D H R G RG GGG
Sbjct: 449 RGRGGGRG---GYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGG 505
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEE 102
GG G RGRG R G GAP G P G G P + + G
Sbjct: 506 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG---PPRGSRGGRGGPAQQQRGRGSRGSR 562
Query: 103 NDEQGNYSKRKIVSNWDRYQDIEKEVNNESG---------ESQRGTDFSVLLSSAGDSFS 153
+ GN ++ +++ ++ NN+ Q+G D+S D+
Sbjct: 563 GNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQE 622
Query: 154 QFRFAEEKEW 163
++ ++W
Sbjct: 623 FYQDTYGQQW 632
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 56.6 bits (135), Expect = 3e-08
Identities = 43/126 (34%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARG 64
RG RG RG P RGR G A RGG G G G R G + RG RG RG
Sbjct: 463 RGGRGARGAAPSRGRGAAPPR----GRAGYSQRGGPGSARGVRGARGGAQQQRG-RGVRG 517
Query: 65 GRGGGGAPRGSRREPGGWGAGASAPVEDDSD-------AETYGEENDEQGNYSKRKIVSN 117
RGG G G +R+ G+ S + ++ A+ + D GNY + N
Sbjct: 518 ARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDHSGNYGYKS--EN 575
Query: 118 WDRYQD 123
+ YQD
Sbjct: 576 QEFYQD 581
Score = 37.0 bits (84), Expect = 0.028
Identities = 41/152 (26%), Positives = 53/152 (34%), Gaps = 35/152 (23%)
Query: 10 GRGRRPGRGRP-------------GGDRHSERPGAAAAV---------ARGGGGGGGGDG 47
GRG R G G P G D H+ R G ARG GG G
Sbjct: 412 GRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGAR-- 469
Query: 48 GGRRGRGRGRGFRGARGG---RGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEEND 104
G RGRG R G RGG G+ RG R GA + G
Sbjct: 470 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVR--------GARGGAQQQRGRGVRGARGG 521
Query: 105 EQGNYSKRKIVSNWDRYQDIEKEVNNESGESQ 136
GN ++ +++ ++ NN++ SQ
Sbjct: 522 RGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQ 553
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 56.6 bits (135), Expect = 3e-08
Identities = 43/126 (34%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARG 64
RG RG RG P RGR G A RGG G G G R G + RG RG RG
Sbjct: 498 RGGRGARGAAPSRGRGAAPPR----GRAGYSQRGGPGSARGVRGARGGAQQQRG-RGVRG 552
Query: 65 GRGGGGAPRGSRREPGGWGAGASAPVEDDSD-------AETYGEENDEQGNYSKRKIVSN 117
RGG G G +R+ G+ S + ++ A+ + D GNY + N
Sbjct: 553 ARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDHSGNYGYKS--EN 610
Query: 118 WDRYQD 123
+ YQD
Sbjct: 611 QEFYQD 616
Score = 37.0 bits (84), Expect = 0.028
Identities = 41/152 (26%), Positives = 53/152 (34%), Gaps = 35/152 (23%)
Query: 10 GRGRRPGRGRP-------------GGDRHSERPGAAAAV---------ARGGGGGGGGDG 47
GRG R G G P G D H+ R G ARG GG G
Sbjct: 447 GRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGAR-- 504
Query: 48 GGRRGRGRGRGFRGARGG---RGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEEND 104
G RGRG R G RGG G+ RG R GA + G
Sbjct: 505 GAAPSRGRGAAPPRGRAGYSQRGGPGSARGVR--------GARGGAQQQRGRGVRGARGG 556
Query: 105 EQGNYSKRKIVSNWDRYQDIEKEVNNESGESQ 136
GN ++ +++ ++ NN++ SQ
Sbjct: 557 RGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQ 588
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 56.6 bits (135), Expect = 3e-08
Identities = 49/152 (32%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 9 GGRGRRPGRGRPGGDRHSERPGAAAAVARG-----GGGGGGGDGGGRRGRGRGRGFRGAR 63
GG G G G G D+ S G + G GGGG GG G RG GRGRG G
Sbjct: 166 GGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRG-GRGRGGSGGG 224
Query: 64 GGRGGGGAPRGS-RREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDRYQ 122
GG GGGG R S EP G G G G ++G ++K +
Sbjct: 225 GGGGGGGYNRSSGGYEPRGRGGGRGG---------RGGMGGSDRGGFNKFGGPRDQGSRH 275
Query: 123 DIEKEVNNESGESQRGTDFSVLLSSAGDSFSQ 154
D E++ ++ + +G +V + S D F Q
Sbjct: 276 DSEQDNSDNNTIFVQGLGENVTIESVADYFKQ 307
Score = 56.2 bits (134), Expect = 4e-08
Identities = 38/88 (43%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 1 MQAERGARGGRGRRP--GRGRPGGDRHSERPGAAAAVARGGGGGGGG----DGGGRRGRG 54
M + G+ GG G + G G GG +R G + GGGGGGGG GG RG
Sbjct: 184 MSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRG 243
Query: 55 RGRGFRGARGGRGG-GGAPRGSRREPGG 81
RG G RGGRGG GG+ RG + GG
Sbjct: 244 RG----GGRGGRGGMGGSDRGGFNKFGG 267
Score = 43.5 bits (101), Expect = 3e-04
Identities = 25/52 (48%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 34 AVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAG 85
A R GGG+G G RGRG G RG GG G GG RG GG G G
Sbjct: 369 ATRRADFNRGGGNGRGGRGRGGPMG-RGGYGGGGSGGGGRGGFPSGGGGGGG 419
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/76 (43%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 10 GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRG-FRGARGG--R 66
G G PG GG+ +R G G GG D GG RGRG RG FRG RGG R
Sbjct: 454 GPGGGPGGSHMGGNYGDDRRG----------GRGGYDRGGYRGRGGDRGGFRGGRGGGDR 503
Query: 67 GGGGA----PRGSRRE 78
GG G RG R+
Sbjct: 504 GGFGPGKMDSRGEHRQ 519
Score = 41.6 bits (96), Expect = 0.001
Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 20/66 (30%)
Query: 8 RGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRG 67
RGG R GRGR G + RGG GGGG GGGR G GG G
Sbjct: 377 RGGGNGRGGRGRGG------------PMGRGGYGGGGSGGGGRGG--------FPSGGGG 416
Query: 68 GGGAPR 73
GGG R
Sbjct: 417 GGGQQR 422
Score = 37.4 bits (85), Expect = 0.021
Identities = 30/73 (41%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G GG G G G DR R G RG GG GG GGR G RG GF G
Sbjct: 454 GPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRG-GF--GPGK 510
Query: 66 RGGGGAPRGSRRE 78
G R RRE
Sbjct: 511 MDSRGEHRQDRRE 523
Score = 35.4 bits (80), Expect = 0.080
Identities = 43/153 (28%), Positives = 52/153 (33%), Gaps = 43/153 (28%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG---GGDGGGRRGR-------- 53
RG GRG R GRG P G R G + GGG GG GG GGG + R
Sbjct: 377 RGGGNGRGGR-GRGGPMG-----RGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPN 430
Query: 54 -----------------------GRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPV 90
G G G G+ G G RG R GG+ G
Sbjct: 431 PTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGR---GGYDRGGYRGR 487
Query: 91 EDDSDAETYGEENDEQGNYSKRKIVSNWDRYQD 123
D G ++G + K+ S + QD
Sbjct: 488 GGDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQD 520
Score = 35.4 bits (80), Expect = 0.080
Identities = 27/59 (45%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGAR 63
RG RGG R RGR GGDR R G RGGG GG G RG R R R
Sbjct: 473 RGGRGGYDRGGYRGR-GGDRGGFRGG------RGGGDRGGFGPGKMDSRGEHRQDRRER 524
Score = 32.3 bits (72), Expect = 0.68
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 2 QAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRG 61
Q + G+ + G+ + G + S P GG GGG G G+
Sbjct: 124 QPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSS 183
Query: 62 ARGGRGGGGAPRGSRREPGGWGAG 85
G GG G G++ + GG G+G
Sbjct: 184 MSSG-GGSGGGYGNQDQSGGGGSG 206
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 2 QAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGG-------GGGGGDGGGRRGRG 54
Q +RG RG RG G G GG ++ G RGGG GG G + G
Sbjct: 210 QQDRGGRG-RGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGP 268
Query: 55 RGRGFR 60
R +G R
Sbjct: 269 RDQGSR 274
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 56.2 bits (134), Expect = 4e-08
Identities = 36/86 (41%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 4 ERGARGGRGRRPGRGRPGGDRHS------ERPGAAAAVARGGGGGGGGDGGGRRGRGRGR 57
ERG RG GR RG GGDR G + R GGG GG GG G RG
Sbjct: 399 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 458
Query: 58 GFRGARGGRGGGGAPRGSRREPGGWG 83
G+ G RGG GG G + GG+G
Sbjct: 459 GYGGDRGGGYGGDRGGGYGGDRGGYG 484
Score = 50.1 bits (118), Expect = 3e-06
Identities = 44/120 (36%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 4 ERGARGG-RGRRPGRG----RPGGDRHSERPGAAAAVARGGGGG--GGGDGGGRRGRG-- 54
+R + GG G R G G R GG +R G GG GG GGG GG R G G
Sbjct: 427 DRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGD 486
Query: 55 RGRGFRGARGGRGG-----GGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
RG G+ G RGG GG GG G + GG+G S G D G Y
Sbjct: 487 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGY 546
Score = 48.5 bits (114), Expect = 9e-06
Identities = 42/105 (40%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGG-GGGGGGDGGGRRGRGRGRGFRGARG 64
G RGG G RG GGDR G RGG GG GG GG R G G RG G
Sbjct: 470 GDRGG-GYGGDRGGYGGDR-----GGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDR 523
Query: 65 GRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
RGG G RG G+G S D YG D G Y
Sbjct: 524 SRGGYGGDRGG---GSGYGGDRSGGYGGDRSGGGYG--GDRGGGY 563
Score = 47.0 bits (110), Expect = 3e-05
Identities = 32/72 (44%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G RGG G RG GGDR G+ R GG GG GGG G RG G+ G RGG
Sbjct: 514 GDRGGYGGDRSRGGYGGDRGG---GSGYGGDRSGGYGGDRSGGGYGG-DRGGGYGGDRGG 569
Query: 66 RGGGGAPRGSRR 77
GG R R
Sbjct: 570 YGGKMGGRNDYR 581
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/86 (43%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 4 ERGARGG-RGRRPG-RGRPGGDRHS---ERPGAAAAVARGGGGGGGGD-GGGRRGRGRGR 57
+RG GG RG G RG GGDR +R RGGG G GGD GG G G
Sbjct: 494 DRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGG 553
Query: 58 GFRGARGG-----RGGGGAPRGSRRE 78
G+ G RGG RGG G G R +
Sbjct: 554 GYGGDRGGGYGGDRGGYGGKMGGRND 579
Score = 42.4 bits (98), Expect = 7e-04
Identities = 42/114 (36%), Positives = 43/114 (37%), Gaps = 25/114 (21%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG------GGD---GGGRRGRGR 55
RG G RG R GRG GGDR GG GG GGD GGG G
Sbjct: 394 RGYGGERGYR-GRGGRGGDR-------------GGYGGDRSGGGYGGDRSSGGGYSGDRS 439
Query: 56 GRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
G G+ G R G G GG G G G G D YG D G Y
Sbjct: 440 GGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYG--GDRGGGY 491
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGGGGAPR 73
GGG GGGRRGRG G+RG G +G GG P+
Sbjct: 324 GGGSGGGRRGRG---GYRGRGGFQGRGGDPK 351
Score = 38.9 bits (89), Expect = 0.007
Identities = 37/85 (43%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 6 GARGGRGRRPGRGRPGGDRHS---ERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGA 62
G RGG G RG GGDR +R G RGG GG GG RG G G+ G
Sbjct: 485 GDRGG-GYGGDRGGYGGDRGGYGGDRGGYGGD--RGGYGGDRSRGGYGGDRGGGSGYGGD 541
Query: 63 R-GGRGG---GGAPRGSRREPGGWG 83
R GG GG GG G R GG+G
Sbjct: 542 RSGGYGGDRSGGGYGGDR--GGGYG 564
Score = 37.4 bits (85), Expect = 0.021
Identities = 42/132 (31%), Positives = 46/132 (34%), Gaps = 30/132 (22%)
Query: 5 RGARGGRGRRPGRGRPGGDRHS------------------------ERPGAAAAVARGGG 40
RG G RGR +GR GGD S P + GG
Sbjct: 332 RGRGGYRGRGGFQGR-GGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGD 390
Query: 41 GGGGGDGG--GRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGW-GAGASAPVEDDSDAE 97
G G GG G RGRG G RG GG GG G R GG+ G + D
Sbjct: 391 FRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGG 450
Query: 98 TYGEENDEQGNY 109
YG D G Y
Sbjct: 451 GYG--GDRGGGY 460
Score = 35.0 bits (79), Expect = 0.10
Identities = 37/127 (29%), Positives = 40/127 (31%), Gaps = 56/127 (44%)
Query: 37 RGGGGGGGGDG-GGRRGRG----------------------------------------- 54
RGGG GGG G GG RGRG
Sbjct: 323 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 382
Query: 55 ---------RGRGFRGARG--GRGGGGAPR---GSRREPGGWGAGASAPVEDDSDAETYG 100
RGRG+ G RG GRGG G R G R GG+G S+ D G
Sbjct: 383 DSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGG 442
Query: 101 EENDEQG 107
D G
Sbjct: 443 YGGDRSG 449
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 41 GGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGG---WGAGASAPVE-DDSDA 96
G GG GGGR G + RG G GG RG + GG +G A E D+SD
Sbjct: 173 GYGGSQGGGRGRGGYDKDGRGPMTGSSGG--DRGGFKNFGGHRDYGPRTDADSESDNSDN 230
Query: 97 ETY-------GEENDEQGNYSKR 112
T G D+ G + K+
Sbjct: 231 NTIFVQGLGEGVSTDQVGEFFKQ 253
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 56.2 bits (134), Expect = 4e-08
Identities = 36/86 (41%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 4 ERGARGGRGRRPGRGRPGGDRHS------ERPGAAAAVARGGGGGGGGDGGGRRGRGRGR 57
ERG RG GR RG GGDR G + R GGG GG GG G RG
Sbjct: 402 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 461
Query: 58 GFRGARGGRGGGGAPRGSRREPGGWG 83
G+ G RGG GG G + GG+G
Sbjct: 462 GYGGDRGGGYGGDRGGGYGGDRGGYG 487
Score = 50.1 bits (118), Expect = 3e-06
Identities = 44/120 (36%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 4 ERGARGG-RGRRPGRG----RPGGDRHSERPGAAAAVARGGGGG--GGGDGGGRRGRG-- 54
+R + GG G R G G R GG +R G GG GG GGG GG R G G
Sbjct: 430 DRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGD 489
Query: 55 RGRGFRGARGGRGG-----GGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
RG G+ G RGG GG GG G + GG+G S G D G Y
Sbjct: 490 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGY 549
Score = 48.5 bits (114), Expect = 9e-06
Identities = 42/105 (40%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGG-GGGGGGDGGGRRGRGRGRGFRGARG 64
G RGG G RG GGDR G RGG GG GG GG R G G RG G
Sbjct: 473 GDRGG-GYGGDRGGYGGDR-----GGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDR 526
Query: 65 GRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
RGG G RG G+G S D YG D G Y
Sbjct: 527 SRGGYGGDRGG---GSGYGGDRSGGYGGDRSGGGYG--GDRGGGY 566
Score = 47.0 bits (110), Expect = 3e-05
Identities = 32/72 (44%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G RGG G RG GGDR G+ R GG GG GGG G RG G+ G RGG
Sbjct: 517 GDRGGYGGDRSRGGYGGDRGG---GSGYGGDRSGGYGGDRSGGGYGG-DRGGGYGGDRGG 572
Query: 66 RGGGGAPRGSRR 77
GG R R
Sbjct: 573 YGGKMGGRNDYR 584
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/86 (43%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 4 ERGARGG-RGRRPG-RGRPGGDRHS---ERPGAAAAVARGGGGGGGGD-GGGRRGRGRGR 57
+RG GG RG G RG GGDR +R RGGG G GGD GG G G
Sbjct: 497 DRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGG 556
Query: 58 GFRGARGG-----RGGGGAPRGSRRE 78
G+ G RGG RGG G G R +
Sbjct: 557 GYGGDRGGGYGGDRGGYGGKMGGRND 582
Score = 42.4 bits (98), Expect = 7e-04
Identities = 42/114 (36%), Positives = 43/114 (37%), Gaps = 25/114 (21%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG------GGD---GGGRRGRGR 55
RG G RG R GRG GGDR GG GG GGD GGG G
Sbjct: 397 RGYGGERGYR-GRGGRGGDR-------------GGYGGDRSGGGYGGDRSSGGGYSGDRS 442
Query: 56 GRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
G G+ G R G G GG G G G G D YG D G Y
Sbjct: 443 GGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYG--GDRGGGY 494
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGGGGAPR 73
GGG GGGRRGRG G+RG G +G GG P+
Sbjct: 327 GGGSGGGRRGRG---GYRGRGGFQGRGGDPK 354
Score = 38.9 bits (89), Expect = 0.007
Identities = 37/85 (43%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 6 GARGGRGRRPGRGRPGGDRHS---ERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGA 62
G RGG G RG GGDR +R G RGG GG GG RG G G+ G
Sbjct: 488 GDRGG-GYGGDRGGYGGDRGGYGGDRGGYGGD--RGGYGGDRSRGGYGGDRGGGSGYGGD 544
Query: 63 R-GGRGG---GGAPRGSRREPGGWG 83
R GG GG GG G R GG+G
Sbjct: 545 RSGGYGGDRSGGGYGGDR--GGGYG 567
Score = 37.4 bits (85), Expect = 0.021
Identities = 42/132 (31%), Positives = 46/132 (34%), Gaps = 30/132 (22%)
Query: 5 RGARGGRGRRPGRGRPGGDRHS------------------------ERPGAAAAVARGGG 40
RG G RGR +GR GGD S P + GG
Sbjct: 335 RGRGGYRGRGGFQGR-GGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGD 393
Query: 41 GGGGGDGG--GRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGW-GAGASAPVEDDSDAE 97
G G GG G RGRG G RG GG GG G R GG+ G + D
Sbjct: 394 FRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGG 453
Query: 98 TYGEENDEQGNY 109
YG D G Y
Sbjct: 454 GYG--GDRGGGY 463
Score = 35.0 bits (79), Expect = 0.10
Identities = 37/127 (29%), Positives = 40/127 (31%), Gaps = 56/127 (44%)
Query: 37 RGGGGGGGGDG-GGRRGRG----------------------------------------- 54
RGGG GGG G GG RGRG
Sbjct: 326 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 385
Query: 55 ---------RGRGFRGARG--GRGGGGAPR---GSRREPGGWGAGASAPVEDDSDAETYG 100
RGRG+ G RG GRGG G R G R GG+G S+ D G
Sbjct: 386 DSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGG 445
Query: 101 EENDEQG 107
D G
Sbjct: 446 YGGDRSG 452
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 41 GGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGG---WGAGASAPVE-DDSDA 96
G GG GGGR G + RG G GG RG + GG +G A E D+SD
Sbjct: 176 GYGGSQGGGRGRGGYDKDGRGPMTGSSGG--DRGGFKNFGGHRDYGPRTDADSESDNSDN 233
Query: 97 ETY-------GEENDEQGNYSKR 112
T G D+ G + K+
Sbjct: 234 NTIFVQGLGEGVSTDQVGEFFKQ 256
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 56.2 bits (134), Expect = 4e-08
Identities = 32/58 (55%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 19 RPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSR 76
RP G++ R G G GG GGG GGG RG GRG GFRG RG GGGG RG R
Sbjct: 160 RPPGEKGPPRGG-------GRGGRGGGRGGGGRGGGRGGGFRGGRG--GGGGGFRGGR 208
Score = 48.5 bits (114), Expect = 9e-06
Identities = 34/65 (52%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 13 RRPG-RGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGR--GRGRGFRGARGGRGGG 69
R PG +G P G R G RGGGG GGG GGG RG G G GF RGGRGGG
Sbjct: 160 RPPGEKGPPRGGGRGGRGGG-----RGGGGRGGGRGGGFRGGRGGGGGGF---RGGRGGG 211
Query: 70 GAPRG 74
RG
Sbjct: 212 FRGRG 216
Score = 46.6 bits (109), Expect = 3e-05
Identities = 28/51 (54%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG--GGDGGGRRGRG 54
G RGGRG G G GG R G RGGGGGG GG GGG RGRG
Sbjct: 171 GGRGGRGGGRGGGGRGGGR-----GGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 44.3 bits (103), Expect = 2e-04
Identities = 26/54 (48%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 19 RPGGDRHSERPGAAAAVARGGGG----GGGGDGGGRRGRGRGRGFRGARGGRGG 68
R GG R G RGG GGGG GGG RG GRG G GGRGG
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
Score = 43.9 bits (102), Expect = 2e-04
Identities = 28/52 (53%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 37 RGGGGGG---GGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAG 85
RGGG GG GG GGG G FRG GG GGGG RG R GG+G G
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGG-GGGGNFRGGGR--GGFGRG 52
Score = 43.5 bits (101), Expect = 3e-04
Identities = 31/76 (40%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 1 MQAERGARGGRGRRPGRG---RPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGR 57
M G RGG R G G R G H G GGGGGG GGGR G GRG
Sbjct: 1 MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGG-------GGGGGGNFRGGGRGGFGRGG 53
Query: 58 GFRGARGGRGGGGAPR 73
G G G+ G R
Sbjct: 54 GRGGFNKGQDQGPPER 69
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 56.2 bits (134), Expect = 4e-08
Identities = 32/58 (55%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 19 RPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSR 76
RP G++ R G G GG GGG GGG RG GRG GFRG RG GGGG RG R
Sbjct: 160 RPPGEKGPPRGG-------GRGGRGGGRGGGGRGGGRGGGFRGGRG--GGGGGFRGGR 208
Score = 48.5 bits (114), Expect = 9e-06
Identities = 34/65 (52%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 13 RRPG-RGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGR--GRGRGFRGARGGRGGG 69
R PG +G P G R G RGGGG GGG GGG RG G G GF RGGRGGG
Sbjct: 160 RPPGEKGPPRGGGRGGRGGG-----RGGGGRGGGRGGGFRGGRGGGGGGF---RGGRGGG 211
Query: 70 GAPRG 74
RG
Sbjct: 212 FRGRG 216
Score = 46.6 bits (109), Expect = 3e-05
Identities = 28/51 (54%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG--GGDGGGRRGRG 54
G RGGRG G G GG R G RGGGGGG GG GGG RGRG
Sbjct: 171 GGRGGRGGGRGGGGRGGGR-----GGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 44.3 bits (103), Expect = 2e-04
Identities = 26/54 (48%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 19 RPGGDRHSERPGAAAAVARGGGG----GGGGDGGGRRGRGRGRGFRGARGGRGG 68
R GG R G RGG GGGG GGG RG GRG G GGRGG
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
Score = 43.9 bits (102), Expect = 2e-04
Identities = 28/52 (53%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 37 RGGGGGG---GGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAG 85
RGGG GG GG GGG G FRG GG GGGG RG R GG+G G
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGG-GGGGNFRGGGR--GGFGRG 52
Score = 43.5 bits (101), Expect = 3e-04
Identities = 31/76 (40%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 1 MQAERGARGGRGRRPGRG---RPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGR 57
M G RGG R G G R G H G GGGGGG GGGR G GRG
Sbjct: 1 MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGG-------GGGGGGNFRGGGRGGFGRGG 53
Query: 58 GFRGARGGRGGGGAPR 73
G G G+ G R
Sbjct: 54 GRGGFNKGQDQGPPER 69
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 55.8 bits (133), Expect = 6e-08
Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 31 AAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAP--------RGSRREPGGW 82
++ AV GGGGGGG GGG G G G G GA GG GGG +P REPG
Sbjct: 52 SSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSP 111
Query: 83 GAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDRYQDIEKE 127
+P D + G E++ Q +R+ +N+ Q E E
Sbjct: 112 RLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELE 156
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 55.8 bits (133), Expect = 6e-08
Identities = 33/82 (40%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 4 ERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGAR 63
+RG R P P + E G GGGGGG G GGG GRG G G
Sbjct: 307 DRGGRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGW 366
Query: 64 GGRGGGGAPRGSRREPGGWGAG 85
GG GGGG GGWG G
Sbjct: 367 GGGGGGG---------GGWGGG 379
Score = 55.8 bits (133), Expect = 6e-08
Identities = 37/82 (45%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G RGG G GRG GG G GGGGGGG G RG GRG G RGG
Sbjct: 345 GGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGG 404
Query: 66 RGGG--GAPRGSRREPGGWGAG 85
GG G P G GG G G
Sbjct: 405 YGGRGYGDPYGGGGGGGGGGGG 426
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/88 (43%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG------GGDGGGRRGRGRGRGF 59
G RGG G G G GG G G GGGG GG GGG RG +GRG
Sbjct: 333 GGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGD 392
Query: 60 RGARGGRGGGG--APRGSRREPGGWGAG 85
G RGG GG G RG GG G G
Sbjct: 393 YGGRGGYGGRGGYGGRGYGDPYGGGGGG 420
Score = 52.4 bits (124), Expect = 6e-07
Identities = 37/83 (44%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARG 64
RG GG G GRG GG G GGGG GGG GGG G G G RG
Sbjct: 335 RGGWGGGGGGGGRGGGGGG------GGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQ 388
Query: 65 GRG--GGGAPRGSRREPGGWGAG 85
GRG GG G R GG G G
Sbjct: 389 GRGDYGGRGGYGGRGGYGGRGYG 411
Score = 51.2 bits (121), Expect = 1e-06
Identities = 34/81 (41%), Positives = 34/81 (41%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARG 64
RG GG G R G G GG G GGGG GG G G G G G RG G
Sbjct: 347 RGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYG 406
Query: 65 GRGGGGAPRGSRREPGGWGAG 85
GRG G G GG G G
Sbjct: 407 GRGYGDPYGGGGGGGGGGGGG 427
Score = 47.4 bits (111), Expect = 2e-05
Identities = 28/67 (41%), Positives = 30/67 (44%)
Query: 17 RGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSR 76
R GG R G GGGGGGG G G G G G G G G GGGG RG
Sbjct: 328 RQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGF 387
Query: 77 REPGGWG 83
+ G +G
Sbjct: 388 QGRGDYG 394
Score = 47.0 bits (110), Expect = 3e-05
Identities = 32/72 (44%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G GGRG GRG GG RGG GG GG G GRG G + G GG
Sbjct: 379 GGGGGRGGFQGRGDYGG--------------RGGYGGRGGYG----GRGYGDPYGGGGGG 420
Query: 66 RGGGGAPRGSRR 77
GGGG G RR
Sbjct: 421 GGGGGGGGGYRR 432
Score = 37.7 bits (86), Expect = 0.016
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGG 44
RG GGRG GRG GG + + G GGGGGGG
Sbjct: 390 RGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGG 429
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 55.1 bits (131), Expect = 1e-07
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 12 GRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGA 71
G P G PGG + R + A GGGGGGGG GG G G G + + G GGG
Sbjct: 3 GGGPSGGGPGGSGRA-RTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVG 61
Query: 72 PRGSRREPGGWGAGAS 87
S PGG G G S
Sbjct: 62 ASSSGGGPGGSGGGGS 77
Score = 43.5 bits (101), Expect = 3e-04
Identities = 38/121 (31%), Positives = 47/121 (38%), Gaps = 21/121 (17%)
Query: 10 GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFR-GARGGRGG 68
GR R PGG G + + GG GGG G G G G G GG GG
Sbjct: 15 GRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGGGPGGSGG 74
Query: 69 GGAPRGSRREPGGWGAGASAP-----VEDDSDAET-------YGEENDEQGNYSKRKIVS 116
GG+ GG GAG S P + DS T G E ++ Y+ K++
Sbjct: 75 GGS--------GGPGAGTSFPPPGVKLGRDSGKVTTVVATLGQGPERSQEVAYTDIKVIG 126
Query: 117 N 117
N
Sbjct: 127 N 127
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 55.1 bits (131), Expect = 1e-07
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G GG G G G GG G ++ GGG G GG G G G G GG
Sbjct: 486 GHGGGHGGSSGGGYGGGSS-----GGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGG 540
Query: 66 RGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
GGG+ G GG+G G+S+ S + + GE + + Y
Sbjct: 541 GYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKGPRY 584
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/100 (36%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 1 MQAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFR 60
+Q R G G G GR GG GG GGG GGG G G G G
Sbjct: 446 IQTYRSLLEGEGSSGGGGRGGGS------------FGGGYGGG-SSGGGSSGGGHGGGHG 492
Query: 61 GARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYG 100
G+ GG G GG G GG+G G+S+ S + YG
Sbjct: 493 GSSGG-GYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYG 531
Score = 39.7 bits (91), Expect = 0.004
Identities = 27/85 (31%), Positives = 35/85 (41%)
Query: 1 MQAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFR 60
+ + +G+ GG G R S G + G GG GG GG RG F
Sbjct: 36 ISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFG 95
Query: 61 GARGGRGGGGAPRGSRREPGGWGAG 85
G+ GG GGG+ G G +G G
Sbjct: 96 GSYGGSFGGGSFGGGSFGGGSFGGG 120
Score = 37.7 bits (86), Expect = 0.016
Identities = 46/161 (28%), Positives = 60/161 (37%), Gaps = 32/161 (19%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G+ GG G G G GG G+++ GG GGG GG G G F G GG
Sbjct: 69 GSSGGYG---GLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGG--GSFGGGSFGG--GG 121
Query: 66 RGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEEND------------EQGNYSKRK 113
GGGG G G G G + ++ T ND E+ NY
Sbjct: 122 FGGGGFGGGF-----GGGFGGDGGLLSGNEKVTMQNLNDRLASYLDKVRALEESNYELEG 176
Query: 114 IVSNWDRYQDIEKEVNNESGESQRGTDFSVLLSSAGDSFSQ 154
+ W EK N+ GE + D+S + D +Q
Sbjct: 177 KIKEW-----YEKHGNSHQGEPR---DYSKYYKTIDDLKNQ 209
Score = 35.8 bits (81), Expect = 0.061
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G GG G G G R S G+ GG GG G G G G G GG
Sbjct: 17 GGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGG 76
Query: 66 RG--GGGAPRGS 75
G GGG+ RGS
Sbjct: 77 LGGFGGGSFRGS 88
Score = 35.4 bits (80), Expect = 0.080
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 7 ARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGG-RRGRGRGRGFRGARGG 65
+R G G G GG S R ++ GG GG GG RG G F G+ GG
Sbjct: 14 SRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGG 73
Query: 66 RGG-GGAPRGSRREPGGWGAGA 86
GG GG GS R G +G+ +
Sbjct: 74 YGGLGGFGGGSFR--GSYGSSS 93
Score = 35.0 bits (79), Expect = 0.10
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 24 RHSERPGAAAAVARGGGGGGGGDGGG-----RRGRGRGR--------GFRG---ARGGRG 67
R+S +++ + GGGGGGG GGG R +G GF G +RG G
Sbjct: 4 RYSSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSG 63
Query: 68 GG--GAPRGSRREPGGWGAGA 86
GG G G GG+G G+
Sbjct: 64 GGCFGGSSGGYGGLGGFGGGS 84
Score = 28.9 bits (63), Expect = 7.5
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 42 GGGGDGGGRRGRGRGRGFR--GARGGRGGGGAPRG------SRREPGGWGAGASA 88
GGGG GGG G G R ++G GGG + G SR GG G S+
Sbjct: 17 GGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSS 71
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 55.1 bits (131), Expect = 1e-07
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARG 64
RG G G PG GG S+ G+ G G GGG GGG G G G G RG
Sbjct: 213 RGGGGNFGPGPGSNFRGG---SDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYG--GGRG 267
Query: 65 GRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEEN-DEQGNYSKR 112
G GGGG G+ + GG+G G D+ YG N ++ GNY+++
Sbjct: 268 GYGGGGPGYGN--QGGGYGGG-----YDNYGGGNYGSGNYNDFGNYNQQ 309
Score = 29.3 bits (64), Expect = 5.7
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 24/86 (27%)
Query: 5 RGARGGRGRRPGRGRPGGD----------------------RHSERPGAAAAVARGGGGG 42
RG GG G PG G GG ++++P + G GG
Sbjct: 266 RGGYGGGG--PGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 323
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGG 68
GG G G G G GG GG
Sbjct: 324 SRNMGGPYGGGNYGPGGSGGSGGYGG 349
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 55.1 bits (131), Expect = 1e-07
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARG 64
RG G G PG GG S+ G+ G G GGG GGG G G G G RG
Sbjct: 201 RGGGGNFGPGPGSNFRGG---SDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYG--GGRG 255
Query: 65 GRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEEN-DEQGNYSKR 112
G GGGG G+ + GG+G G D+ YG N ++ GNY+++
Sbjct: 256 GYGGGGPGYGN--QGGGYGGG-----YDNYGGGNYGSGNYNDFGNYNQQ 297
Score = 29.3 bits (64), Expect = 5.7
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 24/86 (27%)
Query: 5 RGARGGRGRRPGRGRPGGD----------------------RHSERPGAAAAVARGGGGG 42
RG GG G PG G GG ++++P + G GG
Sbjct: 254 RGGYGGGG--PGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 311
Query: 43 GGGDGGGRRGRGRGRGFRGARGGRGG 68
GG G G G G GG GG
Sbjct: 312 SRNMGGPYGGGNYGPGGSGGSGGYGG 337
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/78 (39%), Positives = 35/78 (44%)
Query: 10 GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGG 69
G G G GG R S G ++ + GG G GG GGG G G G RGG GGG
Sbjct: 535 GGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGG 594
Query: 70 GAPRGSRREPGGWGAGAS 87
G R GG +G S
Sbjct: 595 GGGSSGGRGSGGGSSGGS 612
Score = 47.8 bits (112), Expect = 2e-05
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 9 GGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGG 68
G G G G GG S G+++ RGG GGGGG G GRG G G G G GG
Sbjct: 560 GSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSG--GRGSGGGSSG--GSIGG 615
Query: 69 GGAPRGSRREPGG 81
G+ G + GG
Sbjct: 616 RGSSSGGVKSSGG 628
Score = 45.8 bits (107), Expect = 6e-05
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDG-----GGRRGRGRGRGFR 60
G+ GG G GRG G S G + + GGGGG G G GG RG G G G
Sbjct: 540 GSGGGGGG--GRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRG-GSGGGGG 596
Query: 61 GARGGRGGGGAPRGSRREPGGWGAGA 86
G+ GGRG GG G GG G+ +
Sbjct: 597 GSSGGRGSGGGSSGG--SIGGRGSSS 620
Score = 43.9 bits (102), Expect = 2e-04
Identities = 30/64 (46%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 21 GGDRHSERPGAAAAVARGGGG-GGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREP 79
GG R S G GGGG GGGG GGG G G GF GG GGGG G
Sbjct: 83 GGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGF--GGGGYG 140
Query: 80 GGWG 83
GG+G
Sbjct: 141 GGYG 144
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 35 VARGG--GGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVED 92
++ GG GGGGGG G G G G G G+ GG GGG GS G G G+
Sbjct: 512 ISGGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGG 571
Query: 93 DSDAETYGEENDEQG 107
+YG + G
Sbjct: 572 GGGHGSYGSGSSSGG 586
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 25 HSERPGAAAAVARGGGGGGG----GDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPG 80
H+ G + GGG G G G GGG G G G G G RG G GG+ GS
Sbjct: 509 HTTISGGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGG--GGRGSYGSGGSSYGSGGGSY 566
Query: 81 GWGAG 85
G G G
Sbjct: 567 GSGGG 571
Score = 38.9 bits (89), Expect = 0.007
Identities = 32/74 (43%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 9 GGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG-GGDGGGRRGRGRGRGFRGARGGRG 67
GGRG G G GG G G GGGG GG G G G G G GF G G G
Sbjct: 84 GGRGSGFGGGYGGGGF-----GGGGFGGGGFGGGGIGGGGFGGFGSG-GGGFGGGGFGGG 137
Query: 68 GGGAPRGSRREPGG 81
G G G PGG
Sbjct: 138 GYGGGYGPVCPPGG 151
Score = 38.5 bits (88), Expect = 0.009
Identities = 35/97 (36%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 9 GGRGRRPGRGRPGGDRHSERPGAAAA----VARGGG-----------GGGGGDGGGRRGR 53
GG G G G G R G + + VARGGG GG GG G G G
Sbjct: 50 GGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGF 109
Query: 54 GRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPV 90
G G G GG G GG G GG G PV
Sbjct: 110 GGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYGPV 146
Score = 37.0 bits (84), Expect = 0.028
Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 21 GGDRHSERPGAAAAVARGGGGGG--GGDGGGRRGR----------GRGRGFRGARGGRGG 68
GG R G + + G GGG G GGG GR G G G G+ GG GG
Sbjct: 515 GGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGG 574
Query: 69 ------GGAPRGSRREPGGWGAGAS 87
G + G R GG G G+S
Sbjct: 575 HGSYGSGSSSGGYRGGSGGGGGGSS 599
Score = 35.8 bits (81), Expect = 0.061
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 37/107 (34%)
Query: 12 GRRPGRGRPGGD----RHSERPGAAAAVARGGGGGG----GGDGGG-------------- 49
G R G G G + R +++ GGGGG GG GG
Sbjct: 10 GYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAGGGFGSRSLVN 69
Query: 50 -----------RRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAG 85
RG GRG GF G GG G GG G GG+G G
Sbjct: 70 LGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGFGG----GGFGGG 112
Score = 34.3 bits (77), Expect = 0.18
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 3/126 (2%)
Query: 3 AERGARG-GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRG 61
A G RG G G G G GG + GG GG G GGG G G G G G
Sbjct: 81 ARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGG--G 138
Query: 62 ARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDRY 121
GG G P G + VE D + + EQ + S D+
Sbjct: 139 YGGGYGPVCPPGGIQEVTINQSLLQPLNVEIDPEIQKVKSREREQIKSLNNQFASFIDKV 198
Query: 122 QDIEKE 127
+ +E++
Sbjct: 199 RFLEQQ 204
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 53.5 bits (127), Expect = 3e-07
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 5 RGARGGRGRRPGRGRPGGDR---HSERPGAAAAVARGGGGGG-------GGDGGGRRGRG 54
RG+RGG G G G GG R G+ + G G GG GG GGG G G
Sbjct: 487 RGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSG-G 545
Query: 55 RGRGFRGARGGRGGGGAPRGSRREPGGWGAGASA 88
G G G GG GGG+ G GG+G G+ +
Sbjct: 546 SGGGHSGGSGGNYGGGSGSGG-GSGGGYGGGSGS 578
Score = 52.4 bits (124), Expect = 6e-07
Identities = 35/85 (41%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGG--GGGGGGDGGGRRGRGRGRGFRGAR 63
G+ GG G G G GG HS G + GG GGG G GG G G G G RG
Sbjct: 525 GSGGGSGGGYGGGSGGG--HSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGS 582
Query: 64 GGRGGGGAPRGSRREPGGWGAGASA 88
GG GGG+ G G +G G A
Sbjct: 583 GGSHGGGSGFGG-ESGGSYGGGEEA 606
Score = 52.0 bits (123), Expect = 8e-07
Identities = 37/104 (35%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
G RGG G GRG +RGG GG G GG G G G G RG GG
Sbjct: 476 GGRGGSGGSYGRG-----------------SRGGSGGSYGGGGSGGGYGGGSGSRGGSGG 518
Query: 66 RGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNY 109
GGG+ G GG+G G+ S G GNY
Sbjct: 519 SYGGGSGSGG-GSGGGYGGGSGG---GHSGGSGGGHSGGSGGNY 558
Score = 50.8 bits (120), Expect = 2e-06
Identities = 39/106 (36%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGG-GGDGGGRRGRGRGR--GFRGA 62
G GG G R G G G G+ G GGG GG GGG G G G G+
Sbjct: 505 GYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGS 564
Query: 63 RGGRGGG-GAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQG 107
GG GGG G GSR GG G S + + GEE G
Sbjct: 565 GGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSG 610
Score = 49.7 bits (117), Expect = 4e-06
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGG-GGGGGDGGGRRG-RGRGRGFRGAR 63
G+ GG G G GG + G+ + GGG GGG G GG G G G GF G
Sbjct: 537 GSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGES 596
Query: 64 GGRGGGGAPRGSRREPGGWGAGA 86
GG GGG GG+G G+
Sbjct: 597 GGSYGGGEEASG--SGGGYGGGS 617
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/127 (35%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARG 64
RG G G G G GG S G +RG GG G GG G G GF G G
Sbjct: 63 RGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASG--GGYSSSGGFGGGFGGGSG 120
Query: 65 GRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDRYQDI 124
G GGG G GG+G GA D T E++ Q S ++ S D+ Q +
Sbjct: 121 GGFGGGYGSGFGGF-GGFGGGAGG---GDGGILTANEKSTMQELNS--RLASYLDKVQAL 174
Query: 125 EKEVNNE 131
E E NN+
Sbjct: 175 E-EANND 180
Score = 46.2 bits (108), Expect = 5e-05
Identities = 37/102 (36%), Positives = 40/102 (39%), Gaps = 24/102 (23%)
Query: 6 GARGGRGRRPG-------------RGRPGGDRHSERP----GAAAAVARGGGGG-----G 43
G GG G G G GG R S G++ RGGGG G
Sbjct: 15 GGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYG 74
Query: 44 GGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAG 85
GG GGG G GF G G RG GGA G GG+G G
Sbjct: 75 GGSGGGFSASSLGGGFGG--GSRGFGGASGGGYSSSGGFGGG 114
Score = 42.7 bits (99), Expect = 5e-04
Identities = 27/74 (36%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 21 GGDRHSERPGAAAAVARGGGGGG---------GGDGGGRRGRGRGRGFRGARGGRGGGGA 71
GG E GA + GG GG GG GG G G G G+ G G RGG G
Sbjct: 460 GGQEDFESSGAGK-IGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGG 518
Query: 72 PRGSRREPGGWGAG 85
G GG G
Sbjct: 519 SYGGGSGSGGGSGG 532
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 7 ARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGG------GDGGGRR---GRGRGR 57
+R G G G G G R S +++ GGGGGGG G GGG GRG G
Sbjct: 12 SRSGGGGGGGLGSGGSIRSSYSRFSSS----GGGGGGGRFSSSSGYGGGSSRVCGRGGGG 67
Query: 58 GFRGARGGRGGGGAPRGSRREPGGWGAGA 86
F + GG GGG S GG+G G+
Sbjct: 68 SFGYSYGGGSGGGFSASSL--GGGFGGGS 94
Score = 38.9 bits (89), Expect = 0.007
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 RPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGG------GAPRGSRREPGG 81
R +++ ++R GGGGGGG G G R F + GG GGG G GS R G
Sbjct: 4 RQFSSSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGR 63
Query: 82 WGAGA 86
G G+
Sbjct: 64 GGGGS 68
Score = 34.3 bits (77), Expect = 0.18
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGD-GGGRRGRGRGRGFRGARG 64
G G G G G GG G + G GG GG GGG G G G+ G G
Sbjct: 559 GGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSG 618
Score = 29.3 bits (64), Expect = 5.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 44 GGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAGAS 87
GG GGG G G +R GGG G G+G G+S
Sbjct: 15 GGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSS 58
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 53.1 bits (126), Expect = 4e-07
Identities = 32/80 (40%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 10 GRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGG 69
GR + G PGG G+ RGGGGG GG GGGR RGR R R G
Sbjct: 5 GRTKEGEPGTPGG------AGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERAS 58
Query: 70 GAPR---GSRREPGGWGAGA 86
A R G+ PG W G+
Sbjct: 59 PARRRGPGATTRPGRWSLGS 78
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 52.8 bits (125), Expect = 5e-07
Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGG 65
GA G G +P P R A A ARGGGGGGGG GGGR + R RG
Sbjct: 48 GAAVGGGEQPPPA-PAPRRERRDLPAEPAAARGGGGGGGGGGGGRGPQARARG------- 99
Query: 66 RGGGGAPRGSRREPGGWGA-GASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDRYQDI 124
GG G PRG ++P GA A A S T ++ + K K+ ++ + +
Sbjct: 100 -GGPGEPRG--QQPASRGALPARALDPHPSPLITLETQDGYFSHRPKEKVRTDSNNENSV 156
Query: 125 EKEVNN 130
K+ N
Sbjct: 157 PKDFEN 162
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 52.4 bits (124), Expect = 6e-07
Identities = 36/80 (45%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 9 GGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDG-GGRRGRGRGRGF----RGAR 63
G RRP R R GG RHS RP A + RGG G +G G RG G+ RG+ + R
Sbjct: 101 GDLPRRP-RPRAGGGRHSPRP-AVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRVR 158
Query: 64 GGRGGGGAPRGSRREPGGWG 83
G GAPRG P GWG
Sbjct: 159 SRLAGLGAPRGGAAAPRGWG 178
Score = 34.7 bits (78), Expect = 0.14
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 8 RGGRGRRPGRGRPGGDRHS-ERPGAAA-AVARGGGGGGGGDGGGRR 51
RGG G G G +R +PG A RGGGGG G GGG R
Sbjct: 168 RGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGAR 213
Score = 33.9 bits (76), Expect = 0.23
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 5 RGARGGRGRRPGRG-RPGGDRHS----ERPGAAAAVARGGGGGGGGDGGGRR-GRGRGRG 58
RGA G G+R G G RP R P AA RG GG G G + G
Sbjct: 138 RGALRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAA 197
Query: 59 FRGARGGRGGGG-----APRGSRREPGG 81
RG GG GGG +P +R+ P G
Sbjct: 198 LRGGGGGSEGGGGGARPSPPRARQPPSG 225
Score = 31.2 bits (69), Expect = 1.5
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 11 RGRRPGRGRP---------GGDRHSERPGAA---------AAV---ARGGGGGGGGDGGG 49
R R+P GRP +RH+ R A AAV +RG G
Sbjct: 218 RARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAA 277
Query: 50 RRGRGRGRGFRGARGGRGGGGAP--RGSRREPGG 81
R RG RG R A G GG A G+ PGG
Sbjct: 278 RPTRGGARGHRRADGRARGGCAQLRAGTPSAPGG 311
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 52.4 bits (124), Expect = 6e-07
Identities = 36/80 (45%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 9 GGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDG-GGRRGRGRGRGF----RGAR 63
G RRP R R GG RHS RP A + RGG G +G G RG G+ RG+ + R
Sbjct: 101 GDLPRRP-RPRAGGGRHSPRP-AVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRVR 158
Query: 64 GGRGGGGAPRGSRREPGGWG 83
G GAPRG P GWG
Sbjct: 159 SRLAGLGAPRGGAAAPRGWG 178
Score = 34.7 bits (78), Expect = 0.14
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 8 RGGRGRRPGRGRPGGDRHS-ERPGAAA-AVARGGGGGGGGDGGGRR 51
RGG G G G +R +PG A RGGGGG G GGG R
Sbjct: 168 RGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGAR 213
Score = 33.9 bits (76), Expect = 0.23
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 5 RGARGGRGRRPGRG-RPGGDRHS----ERPGAAAAVARGGGGGGGGDGGGRR-GRGRGRG 58
RGA G G+R G G RP R P AA RG GG G G + G
Sbjct: 138 RGALRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAA 197
Query: 59 FRGARGGRGGGG-----APRGSRREPGG 81
RG GG GGG +P +R+ P G
Sbjct: 198 LRGGGGGSEGGGGGARPSPPRARQPPSG 225
Score = 31.2 bits (69), Expect = 1.5
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 11 RGRRPGRGRP---------GGDRHSERPGAA---------AAV---ARGGGGGGGGDGGG 49
R R+P GRP +RH+ R A AAV +RG G
Sbjct: 218 RARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAA 277
Query: 50 RRGRGRGRGFRGARGGRGGGGAP--RGSRREPGG 81
R RG RG R A G GG A G+ PGG
Sbjct: 278 RPTRGGARGHRRADGRARGGCAQLRAGTPSAPGG 311
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 52.4 bits (124), Expect = 6e-07
Identities = 41/111 (36%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 2 QAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGR---- 57
+ RG GRGR GR GG RG G G G G RGRGRGR
Sbjct: 52 EGARGGGRGRGRWKQAGRGGG-----------VCGRGRGRGRGRGRGRGRGRGRGRPPSG 100
Query: 58 --GFRGARGGRGGGGAPRGS--RREPGGWGAGASAPVEDDSDAETYGEEND 104
G G GG GGGG+ G RREP + +G++ P A G+ D
Sbjct: 101 GSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRGPRATESGKRMD 151
Score = 45.4 bits (106), Expect = 8e-05
Identities = 36/101 (35%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 2 QAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGG---------GDGGGRRG 52
+ E A G GG + P + V R G GGG G GGG G
Sbjct: 16 EGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCG 75
Query: 53 RGRGRGFRGARG---GRGGGGAPRGSR---REPGGWGAGAS 87
RGRGRG RG GRG G P G + GG G G S
Sbjct: 76 RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGS 116
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/97 (37%), Positives = 39/97 (40%), Gaps = 25/97 (25%)
Query: 17 RGRPGGDR--HSERPGAAAAVARGGGGGG----GGDGG-------------GRRGRGRGR 57
R PGG R + G +AA G GG GG G G RG GRGR
Sbjct: 2 RAHPGGGRCCPEQEEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGR 61
Query: 58 GFRGARGGRGGGGAPRGSRREPG-----GWGAGASAP 89
G R + GRGGG RG R G G G G P
Sbjct: 62 G-RWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRP 97
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/101 (34%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGR--------GRG 56
RG GRGR GRGR G G+ GG GGGG GGG R G
Sbjct: 76 RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAG 135
Query: 57 RGFRGARGGRGG-----GGAPRGSRREPGGWGAGASAPVED 92
G RG R G P G ++E +G SA D
Sbjct: 136 PGPRGPRATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSD 176
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 52.4 bits (124), Expect = 6e-07
Identities = 41/111 (36%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 2 QAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGR---- 57
+ RG GRGR GR GG RG G G G G RGRGRGR
Sbjct: 52 EGARGGGRGRGRWKQAGRGGG-----------VCGRGRGRGRGRGRGRGRGRGRGRPPSG 100
Query: 58 --GFRGARGGRGGGGAPRGS--RREPGGWGAGASAPVEDDSDAETYGEEND 104
G G GG GGGG+ G RREP + +G++ P A G+ D
Sbjct: 101 GSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRGPRATESGKRMD 151
Score = 45.4 bits (106), Expect = 8e-05
Identities = 36/101 (35%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 2 QAERGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGG---------GDGGGRRG 52
+ E A G GG + P + V R G GGG G GGG G
Sbjct: 16 EGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCG 75
Query: 53 RGRGRGFRGARG---GRGGGGAPRGSR---REPGGWGAGAS 87
RGRGRG RG GRG G P G + GG G G S
Sbjct: 76 RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGS 116
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/97 (37%), Positives = 39/97 (40%), Gaps = 25/97 (25%)
Query: 17 RGRPGGDR--HSERPGAAAAVARGGGGGG----GGDGG-------------GRRGRGRGR 57
R PGG R + G +AA G GG GG G G RG GRGR
Sbjct: 2 RAHPGGGRCCPEQEEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGR 61
Query: 58 GFRGARGGRGGGGAPRGSRREPG-----GWGAGASAP 89
G R + GRGGG RG R G G G G P
Sbjct: 62 G-RWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRP 97
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/101 (34%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGR--------GRG 56
RG GRGR GRGR G G+ GG GGGG GGG R G
Sbjct: 76 RGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAG 135
Query: 57 RGFRGARGGRGG-----GGAPRGSRREPGGWGAGASAPVED 92
G RG R G P G ++E +G SA D
Sbjct: 136 PGPRGPRATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSD 176
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 52.0 bits (123), Expect = 8e-07
Identities = 36/80 (45%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 9 GGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGR-RGRGRGRGF----RGAR 63
G RRP R R GG RHS RP A + RGG G +G G RG G+ RG+ + R
Sbjct: 101 GDLPRRP-RPRAGGGRHSPRP-AVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQRVR 158
Query: 64 GGRGGGGAPRGSRREPGGWG 83
G GAPRG P GWG
Sbjct: 159 SRLAGLGAPRGGAAAPRGWG 178
Score = 34.7 bits (78), Expect = 0.14
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 8 RGGRGRRPGRGRPGGDRHS-ERPGAAA-AVARGGGGGGGGDGGGRR 51
RGG G G G +R +PG A RGGGGG G GGG R
Sbjct: 168 RGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGAR 213
Score = 33.5 bits (75), Expect = 0.30
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 5 RGARGGRGRRPGRG-RPGGDRHS----ERPGAAAAVARGGGGGGGGDGGGRR-GRGRGRG 58
RGA G G+R G G RP R P AA RG GG G G + G
Sbjct: 138 RGAVRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAA 197
Query: 59 FRGARGGRGGGG-----APRGSRREPGG 81
RG GG GGG +P +R+ P G
Sbjct: 198 LRGGGGGSEGGGGGARPSPPRARQPPSG 225
Score = 31.2 bits (69), Expect = 1.5
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 11 RGRRPGRGRP---------GGDRHSERPGAA---------AAV---ARGGGGGGGGDGGG 49
R R+P GRP +RH+ R A AAV +RG G
Sbjct: 218 RARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAA 277
Query: 50 RRGRGRGRGFRGARGGRGGGGAP--RGSRREPGG 81
R RG RG R A G GG A G+ PGG
Sbjct: 278 RPTRGGARGHRRADGRARGGCAQLRAGTPSAPGG 311
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 51.6 bits (122), Expect = 1e-06
Identities = 45/105 (42%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 6 GARGGRGRRPGR---GRP----GGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRG 58
G GG G G G P GGD + PG GG G G G RGRG GRG
Sbjct: 653 GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRG-GRG 711
Query: 59 ----------FRGARGGRGGGGAPRGSRREPGGW--GAGASAPVE 91
FRGARGGR GGG P G R PGG G G P E
Sbjct: 712 GNEPPPPPPPFRGARGGRSGGGPPNG-RGGPGGGMVGGGGHRPHE 755
Score = 48.9 bits (115), Expect = 7e-06
Identities = 42/104 (40%), Positives = 43/104 (41%), Gaps = 23/104 (22%)
Query: 5 RGARGGR---GRRPGRGRP-------GGDRHSERPGAAAAVARG-----GGGGGGGDG-- 47
RGARGGR G GRG P GG R E PG + G G GGG G G
Sbjct: 723 RGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHR 782
Query: 48 -----GGRRGRGRG-RGFRGARGGRGGGGAPRGSRREPGGWGAG 85
GG G G G R G GG GG R GG GAG
Sbjct: 783 PHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAG 826
Score = 47.0 bits (110), Expect = 3e-05
Identities = 35/100 (35%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 6 GARGGRGRRPGRGRPGGDRHSERPGAAAAVARGGGGG---GGGDGGGRRGRGRGRGFRGA 62
G G RP G GG RP + GGGGG G GGG G R G
Sbjct: 760 GMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGP 819
Query: 63 RGGRGGGGAPRGSRREPGG--WGAGASAPVEDDSDAETYG 100
GG G GG R PGG G+G P E +G
Sbjct: 820 GGGMGAGGGHR-PHEGPGGSMGGSGGHRPHEGPGHGGPHG 858
Score = 46.2 bits (108), Expect = 5e-05
Identities = 35/88 (39%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 8 RGGRGRRPG---RGRPG-GDRHSERPGAAAAVARGGGGGGG------GDGGGRRGRGRGR 57
RGG G PG RGR G G P ARGG GGG G GGG G G R
Sbjct: 693 RGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHR 752
Query: 58 GFRGARGGRGGGGAPRGSRREPGGWGAG 85
G GG G R GG G+G
Sbjct: 753 PHEGPGGGMGNSSGHRPHEGPGGGMGSG 780
Score = 39.7 bits (91), Expect = 0.004
Identities = 37/100 (37%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 8 RGGRGRR-------PGRGRPGGDRHSERPGAAAAVARGGGGGG-GGDGGGRRGRGRGRGF 59
RGGRG P RG GG R G RGG GGG G GG R G G G
Sbjct: 707 RGGRGGNEPPPPPPPFRGARGG-----RSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGM 761
Query: 60 RGARGGR------GGGGAPRGSRREPGG--WGAGASAPVE 91
+ G R GG G+ PGG G G P E
Sbjct: 762 GNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHE 801
Score = 37.7 bits (86), Expect = 0.016
Identities = 29/87 (33%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
Query: 6 GARGGRGRRPGRG----RPGGDRHSERPGAAAAVARGGG-------GGGGGDGGGRRGRG 54
G G G RP G GG H G ++ G G GGG G GGG R
Sbjct: 774 GGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHE 833
Query: 55 RGRGFRGARGGR-----GGGGAPRGSR 76
G G GG G G P G R
Sbjct: 834 GPGGSMGGSGGHRPHEGPGHGGPHGHR 860
Score = 33.9 bits (76), Expect = 0.23
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 6 GARGGRGRR-----PGRGRPGGDRHSERPGAAAAVARG-------GGGGGGGDGGGRRGR 53
G+ GG G PG G P G R + PG RG G G G GGG RG
Sbjct: 837 GSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGH 896
Query: 54 GRGRGFRGARGGR 66
G G R
Sbjct: 897 DGGHSHGGDMSNR 909
>gi|29570782 additional sex combs like 1 [Homo sapiens]
Length = 1541
Score = 51.6 bits (122), Expect = 1e-06
Identities = 103/374 (27%), Positives = 141/374 (37%), Gaps = 68/374 (18%)
Query: 17 RGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRG-GGGAPRGS 75
RG G H E AA A GGGGG GG GGG G GRG GG G PRG
Sbjct: 625 RGARGHHCHRE----AATTAIGGGGGPGGGGGGATDEGGGRGSSSGDGGEACGHPEPRGG 680
Query: 76 RREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWDRYQDIEKEVNNESGES 135
PG D G +++ + R +D+ ES
Sbjct: 681 PSTPG--------KCTSDLQRTQLLPPYPLNGEHTQAGTAMSRARREDLPSLRKEESCLL 732
Query: 136 QRGTDFSVLLSSAGDSFSQFRFAEEKEWDSEASCPKQNSAFYVDSELLVRALQELPLCLR 195
QR T L GD+ SQ A + +A P +S V +E LV Q L
Sbjct: 733 QRAT--VGLTDGLGDA-SQLPVAPTGDQPCQA-LPLLSSQTSV-AERLVEQPQ-----LH 782
Query: 196 LNVAAELVQGTVPLEVPQVKPKRTDDGKGLGMQLKGPLGPGGRGPIFEL---KSVAAGC- 251
+V E GT E +DD + +GP P GPI L ++ G
Sbjct: 783 PDVRTECESGTTSWE--------SDD------EEQGPTVPADNGPIPSLVGDDTLEKGTG 828
Query: 252 ------PVLLGKDNPSPGPSRDSQKPTSPLQSAGDHLEEELDLLLNLDAPIKEGDNILPD 305
P + N +P + +S PT LQ+ ++EL L + P++E D +
Sbjct: 829 QALDSHPTMKDPVNVTPSSTPES-SPTDCLQNRA--FDDELGLGGSC-PPMRESDTRQEN 884
Query: 306 QTSQDLKSK---------EDGEVV-------QEEEVCAKPSVTEE-KNMEPEQPSTSKNV 348
++ L S + EVV +E +P V EE + P P+ ++
Sbjct: 885 LKTKALVSNSSLHWIPIPSNDEVVKQPKPESREHIPSVEPQVGEEWEKAAPTPPALPGDL 944
Query: 349 TEEELEDWLDSMIS 362
T EE D LDS+ S
Sbjct: 945 TAEEGLDPLDSLTS 958
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,136,724
Number of Sequences: 37866
Number of extensions: 1195088
Number of successful extensions: 26836
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 680
Number of HSP's that attempted gapping in prelim test: 8694
Number of HSP's gapped (non-prelim): 8430
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.