Guide to the Human Genome
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Name: SHOX2 Sequence: fasta or formatted (331aa) NCBI GI: 89145413
Description:

short stature homeobox 2 isoform a

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [190aa] short stature homeobox 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         45           6
 C cysteine            1.2          4           1
 D aspartate           3.9         13           2
 E glutamate           7.6         25           2
 F phenylalanine       3.3         11           1
 G glycine            12.7         42          18
 H histidine           3.3         11           3
 I isoleucine          1.2          4           1
 K lysine              5.7         19           2
 L leucine             8.5         28           1
 M methionine          2.1          7           2
 N asparagine          2.1          7           1
 P proline             5.1         17           2
 Q glutamine           4.8         16           2
 R arginine            7.3         24           2
 S serine              6.6         22           2
 T threonine           3.9         13           2
 V valine              5.4         18           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   short stature homeobox 2 isoform a 
SHOX2                 0.538   short stature homeobox 2 isoform b 
SHOX                  0.496   short stature homeobox isoform SHOXa 
SHOX                  0.327   short stature homeobox isoform SHOXb 
ARX                   0.130   aristaless related homeobox 
OTP                   0.121   PREDICTED: orthopedia homeobox 
OTP                   0.121   orthopedia homeobox 
PRRX2                 0.119   paired related homeobox 2 
PITX3                 0.118   paired-like homeodomain 3 
PAX3                  0.116   paired box 3 isoform PAX3i 
PAX3                  0.116   paired box 3 isoform PAX3g 
PAX3                  0.116   paired box 3 isoform PAX3h 
PAX3                  0.116   paired box 3 isoform PAX3e 
PAX3                  0.116   paired box 3 isoform PAX3d 
PAX3                  0.116   paired box 3 isoform PAX3 
RAX                   0.113   retina and anterior neural fold homeobox 
ALX4                  0.113   aristaless-like homeobox 4 
DRGX                  0.113   dorsal root ganglia homeobox 
PRRX1                 0.111   paired mesoderm homeobox 1 isoform pmx-1a 
PRRX1                 0.111   paired mesoderm homeobox 1 isoform pmx-1b 
PAX7                  0.108   paired box 7 isoform 1 
PAX7                  0.108   paired box 7 isoform 2 
PAX7                  0.108   paired box 7 isoform 3 
ALX1                  0.108   cartilage paired-class homeoprotein 1 
PHOX2A                0.108   paired-like homeobox 2a 
ISX                   0.107   intestine-specific homeobox 
UNCX                  0.107   UNC homeobox 
PHOX2B                0.105   paired-like homeobox 2b 
PITX1                 0.105   paired-like homeodomain transcription factor 1 [Hom...
RAX2                  0.102   retina and anterior neural fold homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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