Guide to the Human Genome
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Name: LOC338758 Sequence: fasta or formatted (373aa) NCBI GI: 239750393
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {373aa} PREDICTED: hypothetical protein
alt mRNA {373aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         46           3
 C cysteine            0.5          2           1
 D aspartate           1.3          5           1
 E glutamate           2.1          8           2
 F phenylalanine       1.1          4           1
 G glycine            16.4         61           5
 H histidine           3.2         12           1
 I isoleucine          1.1          4           1
 K lysine              1.3          5           1
 L leucine             8.6         32           2
 M methionine          0.3          1           1
 N asparagine          1.6          6           1
 P proline            13.7         51           5
 Q glutamine           4.0         15           1
 R arginine           17.2         64           2
 S serine              7.2         27           2
 T threonine           4.6         17           1
 V valine              2.4          9           1
 W tryptophan          0.8          3           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC338758             1.000   PREDICTED: hypothetical protein 
LOC338758             0.999   PREDICTED: hypothetical protein 
LOC100292370          0.046   PREDICTED: hypothetical protein 
FLJ37078              0.044   hypothetical protein LOC222183 
APC2                  0.043   adenomatosis polyposis coli 2 
FLJ22184              0.043   PREDICTED: hypothetical protein FLJ22184 
LOC100128511          0.040   PREDICTED: hypothetical protein 
LOC100128511          0.040   PREDICTED: hypothetical protein 
LOC100128511          0.040   PREDICTED: hypothetical protein 
COL3A1                0.039   collagen type III alpha 1 preproprotein 
LOC100293129          0.039   PREDICTED: hypothetical protein 
LOC100293235          0.036   PREDICTED: hypothetical protein 
LOC100291469          0.036   PREDICTED: hypothetical protein XP_002346693 
AVEN                  0.036   cell death regulator aven 
LOC100129463          0.036   PREDICTED: hypothetical protein 
LOC100294413          0.036   PREDICTED: hypothetical protein 
LOC100287063          0.036   PREDICTED: hypothetical protein XP_002342368 
ZIC5                  0.036   zinc finger protein of the cerebellum 5 
PPP1R10               0.035   protein phosphatase 1, regulatory subunit 10 
LOC100291835          0.035   PREDICTED: hypothetical protein XP_002346266 
FLJ31945              0.034   PREDICTED: hypothetical protein 
LOC100290946          0.034   PREDICTED: hypothetical protein XP_002347121 
LOC100129463          0.034   PREDICTED: hypothetical protein 
LOC100288840          0.034   PREDICTED: hypothetical protein XP_002344246 
LOC100129463          0.034   PREDICTED: hypothetical protein 
LOC100129463          0.034   PREDICTED: hypothetical protein 
SRRM1                 0.034   serine/arginine repetitive matrix 1 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
COL1A1                0.032   alpha 1 type I collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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