Guide to the Human Genome
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Name: LOC100288548 Sequence: fasta or formatted (211aa) NCBI GI: 239741182
Description:

PREDICTED: hypothetical protein XP_002342129

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         15           3
 C cysteine            1.4          3           1
 D aspartate           2.4          5           2
 E glutamate           5.2         11           1
 F phenylalanine       1.9          4           1
 G glycine            15.6         33           6
 H histidine           0.9          2           1
 I isoleucine          2.8          6           1
 K lysine              7.1         15           2
 L leucine             9.5         20           2
 M methionine          0.5          1           1
 N asparagine          1.9          4           1
 P proline             8.5         18           2
 Q glutamine           2.4          5           1
 R arginine           14.2         30           4
 S serine              9.5         20           2
 T threonine           4.7         10           2
 V valine              2.4          5           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342129 
LOC100291550          0.640   PREDICTED: hypothetical protein XP_002346431 
AVEN                  0.069   cell death regulator aven 
LOC100290709          0.064   PREDICTED: hypothetical protein XP_002346752 
LOC100292082          0.059   PREDICTED: hypothetical protein XP_002345881 
RALY                  0.049   RNA binding protein (autoantigenic, hnRNP-associated ...
RALY                  0.049   RNA binding protein (autoantigenic, hnRNP-associated...
BAT2                  0.044   HLA-B associated transcript-2 
HOXB3                 0.044   homeobox B3 
MAF                   0.044   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.044   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
FZD8                  0.042   frizzled 8 
GAR1                  0.042   nucleolar protein family A, member 1 
GAR1                  0.042   nucleolar protein family A, member 1 
KRT2                  0.042   keratin 2 
FUS                   0.042   fusion (involved in t(12;16) in malignant liposarcoma...
HCN1                  0.042   hyperpolarization activated cyclic nucleotide-gated...
SOX4                  0.042   SRY (sex determining region Y)-box 4 
C6orf174              0.042   hypothetical protein LOC387104 
FBL                   0.042   fibrillarin 
DHX36                 0.042   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.042   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
U2AF1                 0.042   U2 small nuclear RNA auxillary factor 1 isoform c [H...
U2AF1                 0.042   U2 small nuclear RNA auxillary factor 1 isoform b [H...
U2AF1                 0.042   U2 small nuclear RNA auxillary factor 1 isoform a [Ho...
DHX57                 0.042   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
AR                    0.039   androgen receptor isoform 1 
SYNGAP1               0.039   synaptic Ras GTPase activating protein 1 
ZSWIM6                0.039   zinc finger, SWIM-type containing 6 
KLHDC10               0.039   kelch domain containing 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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