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Search of human proteins with 89886475
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89886475 hypothetical protein LOC163183 [Homo sapiens]
(404 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89886475 hypothetical protein LOC163183 [Homo sapiens] 835 0.0
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 53 4e-07
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 53 4e-07
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens] 42 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.032
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.032
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.032
gi|134031945 SCO-spondin [Homo sapiens] 37 0.032
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 36 0.054
gi|19913396 smoothelin isoform b [Homo sapiens] 36 0.054
gi|19913394 smoothelin isoform c [Homo sapiens] 36 0.054
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 36 0.071
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 36 0.071
gi|19913398 smoothelin isoform a [Homo sapiens] 36 0.071
gi|44662836 breast cancer anti-estrogen resistance 1 [Homo sapiens] 35 0.12
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 35 0.16
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 34 0.27
gi|33286446 opioid growth factor receptor [Homo sapiens] 33 0.35
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 33 0.35
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.35
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 33 0.35
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 33 0.35
gi|8659574 transcription factor E3 [Homo sapiens] 33 0.46
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 33 0.46
gi|11119430 testis-specific kinase substrate [Homo sapiens] 33 0.46
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 33 0.46
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 33 0.60
gi|38788219 zinc finger protein 428 [Homo sapiens] 32 0.78
gi|169210212 PREDICTED: hypothetical protein [Homo sapiens] 32 0.78
>gi|89886475 hypothetical protein LOC163183 [Homo sapiens]
Length = 404
Score = 835 bits (2156), Expect = 0.0
Identities = 404/404 (100%), Positives = 404/404 (100%)
Query: 1 MALSLPLGPRLGSEPLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEH 60
MALSLPLGPRLGSEPLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEH
Sbjct: 1 MALSLPLGPRLGSEPLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEH 60
Query: 61 FQGGPRGNEPAAHPPRWSTPSSYEDPAGGKHCEHPISGLEVLEAEQNSLHLCLLGLGRRL 120
FQGGPRGNEPAAHPPRWSTPSSYEDPAGGKHCEHPISGLEVLEAEQNSLHLCLLGLGRRL
Sbjct: 61 FQGGPRGNEPAAHPPRWSTPSSYEDPAGGKHCEHPISGLEVLEAEQNSLHLCLLGLGRRL 120
Query: 121 QDLEQGLGHWALAQSGMVQLQALQVDLRGAAERVEALLAFGEGLAQRSEPRAWAALEQIL 180
QDLEQGLGHWALAQSGMVQLQALQVDLRGAAERVEALLAFGEGLAQRSEPRAWAALEQIL
Sbjct: 121 QDLEQGLGHWALAQSGMVQLQALQVDLRGAAERVEALLAFGEGLAQRSEPRAWAALEQIL 180
Query: 181 RALGAYRDSIFRRLWQLQAQLVSYSLVFEEANTLDQDLEVEGDSDWPGPGGVWGPWAPSS 240
RALGAYRDSIFRRLWQLQAQLVSYSLVFEEANTLDQDLEVEGDSDWPGPGGVWGPWAPSS
Sbjct: 181 RALGAYRDSIFRRLWQLQAQLVSYSLVFEEANTLDQDLEVEGDSDWPGPGGVWGPWAPSS 240
Query: 241 LPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQGRGQGLEEADTSHSRQDM 300
LPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQGRGQGLEEADTSHSRQDM
Sbjct: 241 LPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQGRGQGLEEADTSHSRQDM 300
Query: 301 LESGLGHQKRLARHQRHSLLRKPQDKKRQASPHLQDVRLEGNPGAPDPASRQPLTFLLIL 360
LESGLGHQKRLARHQRHSLLRKPQDKKRQASPHLQDVRLEGNPGAPDPASRQPLTFLLIL
Sbjct: 301 LESGLGHQKRLARHQRHSLLRKPQDKKRQASPHLQDVRLEGNPGAPDPASRQPLTFLLIL 360
Query: 361 FLLFLLLVGAMFLLPASGGPCCSHARIPRTPYLVLSYVNGLPPV 404
FLLFLLLVGAMFLLPASGGPCCSHARIPRTPYLVLSYVNGLPPV
Sbjct: 361 FLLFLLLVGAMFLLPASGGPCCSHARIPRTPYLVLSYVNGLPPV 404
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 53.1 bits (126), Expect = 4e-07
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 32/195 (16%)
Query: 90 KHCEHPISGLEVLEAEQNSLHLCLLGLGRRLQDLEQGLGHWAL--AQSGMVQLQALQVDL 147
+ H + E E + S+ + L + +L ++E H++ A M QL Q ++
Sbjct: 6238 RRLRHFTNQREEFEGTRESILVWLTEMDLQLTNVE----HFSESDADDKMRQLNGFQQEI 6293
Query: 148 RGAAERVEALLAFGEGLAQRSEPRAWAALEQILRALGAYRDSIFRRLWQLQAQLVSYSLV 207
+++ L+ FGE L Q+SEP +E L L Y +F R+ + +L S +
Sbjct: 6294 TLNTNKIDQLIVFGEQLIQKSEPLDAVLIEDELEELHRYCQEVFGRVSRFHRRLTSCTPG 6353
Query: 208 FE---EANTLDQDL----EVEGDSDWPGPGGVWGPWAPSSL---------------PTST 245
E EA+ + D+ E++ DS W G P +P SL P S
Sbjct: 6354 LEDEKEASENETDMEDPREIQTDS-WRKRGESEEPSSPQSLCHLVAPGHERSGCETPVSV 6412
Query: 246 E---LEWDPAGDIGG 257
+ LEWD GD+GG
Sbjct: 6413 DSIPLEWDHTGDVGG 6427
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 53.1 bits (126), Expect = 4e-07
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 32/195 (16%)
Query: 90 KHCEHPISGLEVLEAEQNSLHLCLLGLGRRLQDLEQGLGHWAL--AQSGMVQLQALQVDL 147
+ H + E E + S+ + L + +L ++E H++ A M QL Q ++
Sbjct: 6238 RRLRHFTNQREEFEGTRESILVWLTEMDLQLTNVE----HFSESDADDKMRQLNGFQQEI 6293
Query: 148 RGAAERVEALLAFGEGLAQRSEPRAWAALEQILRALGAYRDSIFRRLWQLQAQLVSYSLV 207
+++ L+ FGE L Q+SEP +E L L Y +F R+ + +L S +
Sbjct: 6294 TLNTNKIDQLIVFGEQLIQKSEPLDAVLIEDELEELHRYCQEVFGRVSRFHRRLTSCTPG 6353
Query: 208 FE---EANTLDQDL----EVEGDSDWPGPGGVWGPWAPSSL---------------PTST 245
E EA+ + D+ E++ DS W G P +P SL P S
Sbjct: 6354 LEDEKEASENETDMEDPREIQTDS-WRKRGESEEPSSPQSLCHLVAPGHERSGCETPVSV 6412
Query: 246 E---LEWDPAGDIGG 257
+ LEWD GD+GG
Sbjct: 6413 DSIPLEWDHTGDVGG 6427
>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
Length = 858
Score = 41.6 bits (96), Expect = 0.001
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 20/144 (13%)
Query: 8 GPRLGSEPLNHPPGAPR----------EADIVGCTVCPASGEESTSPEQAQTLGQDSLGP 57
G ++ L PPG P E D V T+ A+ E+ S E + +D P
Sbjct: 431 GRKVNFAELPVPPGFPPIPGLESTMGVEEDAVAATL--AAAEKLASAEDSAPADKDEDEP 488
Query: 58 PEHFQGGPRGNEPAA-HPPRWSTPSSYE--DPAGGKHCEHPISG----LEVLEAEQNSLH 110
P H QG P P A P R + PSS +P E P L +LEA +
Sbjct: 489 PGHLQGEPPAQAPVAKKPARPTVPSSQRLPEPRASSSKESPSPSVREQLALLEARKLQYQ 548
Query: 111 LCLLGLGRRLQDLEQGLGHWALAQ 134
L +R QDLEQ + +A+
Sbjct: 549 RAAL-QAKRSQDLEQAKAYLRVAK 571
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.0 bits (84), Expect = 0.032
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+GD PGP G GP P LP P G+ G GP GQK L P G G
Sbjct: 1497 KGDGGIPGPAGPLGPPGPPGLPGPQ----GPKGNKGSTGPAGQKGDSGLPGP---PGSPG 1549
Query: 281 PQG 283
P G
Sbjct: 1550 PPG 1552
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+G + PGPGGV GP P+ E P G+ G GP G + L G +G
Sbjct: 969 QGKTGPPGPGGVVGPQGPTG-------ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG 1021
Query: 281 PQGRGQGLEEAD 292
G QG+ D
Sbjct: 1022 DPG-PQGISGKD 1032
Score = 30.4 bits (67), Expect = 3.0
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGP 281
GD GP G GP P P + P G +G +G +G+K G P E G GP
Sbjct: 1225 GDVGPMGPPGPPGPRGPQG-PNGADGPQGPPGSVGSVGGVGEK-----GEPGE-AGNPGP 1277
Query: 282 QG 283
G
Sbjct: 1278 PG 1279
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.0 bits (84), Expect = 0.032
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+GD PGP G GP P LP P G+ G GP GQK L P G G
Sbjct: 1446 KGDGGIPGPAGPLGPPGPPGLPGPQ----GPKGNKGSTGPAGQKGDSGLPGP---PGSPG 1498
Query: 281 PQG 283
P G
Sbjct: 1499 PPG 1501
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+G + PGPGGV GP P+ E P G+ G GP G + L G +G
Sbjct: 918 QGKTGPPGPGGVVGPQGPTG-------ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG 970
Query: 281 PQGRGQGLEEAD 292
G QG+ D
Sbjct: 971 DPG-PQGISGKD 981
Score = 30.4 bits (67), Expect = 3.0
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGP 281
GD GP G GP P P + P G +G +G +G+K G P E G GP
Sbjct: 1174 GDVGPMGPPGPPGPRGPQG-PNGADGPQGPPGSVGSVGGVGEK-----GEPGE-AGNPGP 1226
Query: 282 QG 283
G
Sbjct: 1227 PG 1228
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.0 bits (84), Expect = 0.032
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+GD PGP G GP P LP P G+ G GP GQK L P G G
Sbjct: 1485 KGDGGIPGPAGPLGPPGPPGLPGPQ----GPKGNKGSTGPAGQKGDSGLPGP---PGSPG 1537
Query: 281 PQG 283
P G
Sbjct: 1538 PPG 1540
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+G + PGPGGV GP P+ E P G+ G GP G + L G +G
Sbjct: 957 QGKTGPPGPGGVVGPQGPTG-------ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG 1009
Query: 281 PQGRGQGLEEAD 292
G QG+ D
Sbjct: 1010 DPG-PQGISGKD 1020
Score = 30.4 bits (67), Expect = 3.0
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGP 281
GD GP G GP P P + P G +G +G +G+K G P E G GP
Sbjct: 1213 GDVGPMGPPGPPGPRGPQG-PNGADGPQGPPGSVGSVGGVGEK-----GEPGE-AGNPGP 1265
Query: 282 QG 283
G
Sbjct: 1266 PG 1267
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 37.0 bits (84), Expect = 0.032
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 227 PGPGGVWGPWAPSSLP 242
PGPGG WGPW+P S+P
Sbjct: 3040 PGPGGEWGPWSPCSVP 3055
Score = 30.4 bits (67), Expect = 3.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 232 VWGPWAPSSLPTS--TELEWDPAGDIGGLG---PLGQKTARTLGVPCELC 276
+WGPW+P +P S L W A + G G P Q++ G PC C
Sbjct: 4620 LWGPWSPCQVPCSGGFRLRWREAEALCGGGCREPWAQESCN--GGPCPEC 4667
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 36.2 bits (82), Expect = 0.054
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGP 281
GD PGP G+ G S P E E P G+IG G +GQK + P GQ GP
Sbjct: 349 GDQGEPGPQGLPG----FSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGP---VGQPGP 401
Query: 282 QGR 284
QGR
Sbjct: 402 QGR 404
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 36.2 bits (82), Expect = 0.054
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 4 SLPLGPRLGSEPLN-HPPGAPREA-----DIVGCTVCPASGEESTSPE--QAQTLGQDSL 55
S P P P + PP P EA ++ G P S ++TSPE ++ TL
Sbjct: 200 SSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEG 259
Query: 56 GPPEHFQGGPRGNEPAAHPPRWSTPSSYEDPAGGKHCEHPISGLEVLEAEQN 107
GP+ A P R + + D AG + C+ +S L + QN
Sbjct: 260 QVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQRSLSVLSPRQPAQN 311
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 36.2 bits (82), Expect = 0.054
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 4 SLPLGPRLGSEPLN-HPPGAPREA-----DIVGCTVCPASGEESTSPE--QAQTLGQDSL 55
S P P P + PP P EA ++ G P S ++TSPE ++ TL
Sbjct: 200 SSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEG 259
Query: 56 GPPEHFQGGPRGNEPAAHPPRWSTPSSYEDPAGGKHCEHPISGLEVLEAEQN 107
GP+ A P R + + D AG + C+ +S L + QN
Sbjct: 260 QVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQRSLSVLSPRQPAQN 311
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 35.8 bits (81), Expect = 0.071
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+G +PGP GV GP P LP P G GP GQ+ +R P L G++G
Sbjct: 887 KGVMGYPGPPGVPGPIGPLGLPGHVGARGPP----GSQGPKGQRGSRG---PDGLLGEQG 939
Query: 281 PQG 283
QG
Sbjct: 940 IQG 942
Score = 30.8 bits (68), Expect = 2.3
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTAR----------TLGV 271
G PGP G+ GP P P G G GP+G + R +GV
Sbjct: 1173 GHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGV 1232
Query: 272 P--CELCGQRGPQG 283
P GQ+GP G
Sbjct: 1233 PGLRGATGQQGPPG 1246
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 35.8 bits (81), Expect = 0.071
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 242 PTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQGRGQGLEEADTSHSRQDM 300
P + ++ P G G +GP G + G P G +GPQG QGL H Q M
Sbjct: 619 PPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGM 677
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 35.8 bits (81), Expect = 0.071
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 4 SLPLGPRLGSEPLN-HPPGAPREA-----DIVGCTVCPASGEESTSPE--QAQTLGQDSL 55
S P P P + PP P EA ++ G P S ++TSPE ++ TL
Sbjct: 200 SSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEG 259
Query: 56 GPPEHFQGGPRGNEPAAHPPRWSTPSSYEDPAGGKHCEHPISGLEVLEAEQN 107
GP+ A P R + + D AG + C+ +S L + QN
Sbjct: 260 QVVNKLLSGPKETPAAQSPHRGPSDTKRADVAGPRPCQRSLSVLSPRQPAQN 311
>gi|44662836 breast cancer anti-estrogen resistance 1 [Homo sapiens]
Length = 870
Score = 35.0 bits (79), Expect = 0.12
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 19 PPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEHFQGGPRGNEPAAHPPRWS 78
PP AP D+ G P + ++ + PPE GG + A PP
Sbjct: 365 PPPAPDLYDV-------PPGLRRPGPGTLYDVPRERVLPPEVADGGVVDSGVYAVPP--- 414
Query: 79 TPSSYEDPAGGKHCEHPISGLEVLEAEQNSLHLCLLGLGRRLQDLEQGLGHWALAQSGMV 138
P+ E PA GK +G + Q++ L + G GR +LE + A Q G+
Sbjct: 415 -PAEREAPAEGKRLSASSTGST--RSSQSASSLEVAGPGREPLELEVAVEALARLQQGVS 471
Query: 139 QLQALQVDLRGAA 151
A +DL G+A
Sbjct: 472 ATVAHLLDLAGSA 484
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 34.7 bits (78), Expect = 0.16
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 15 PLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEHFQGGPRGNEPAAHP 74
P + PP R A ++GC PA S SP ++ G PP H R P A
Sbjct: 18 PPDLPPTPTRRAPLIGCPPSPARPAPSASPSPSRAAG--PFLPPSHASTSSRSPPPRARR 75
Query: 75 PRWSTPSS 82
+ P S
Sbjct: 76 TEPAVPPS 83
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 34.7 bits (78), Expect = 0.16
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 15 PLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEHFQGGPRGNEPAAHP 74
P + PP R A ++GC PA S SP ++ G PP H R P A
Sbjct: 18 PPDLPPTPTRRAPLIGCPPSPARPAPSASPSPSRAAG--PFLPPSHASTSSRSPPPRARR 75
Query: 75 PRWSTPSS 82
+ P S
Sbjct: 76 TEPAVPPS 83
>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
Length = 1016
Score = 33.9 bits (76), Expect = 0.27
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 119 RLQDLEQGLGHWALAQSGMV-QLQALQVDLRGAAERVEALLAFGEGLAQ---RSEPRAWA 174
R + LE+G AQ+G L+ L G ER++ + +GL + R WA
Sbjct: 706 RFRGLEEGQ-----AQAGQCPSLEGRLGRLEGVCERLDTVAGGLQGLREGLSRHVAGLWA 760
Query: 175 ALEQ----------ILRALGAYRDSIFRRLWQLQAQLVSYSLVFEEANTLD-QDLE-VEG 222
L + +L L + + RRL L + L L+ + + L +DL G
Sbjct: 761 GLRETNTTSQMQAALLEKLVGGQAGLGRRLGALNSSL---QLLEDRLHQLSLKDLTGPAG 817
Query: 223 DSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQK 264
++ PGP G+ GP P+ P S + G IG GP G++
Sbjct: 818 EAGPPGPPGLQGPPGPAGPPGSPGKD-GQEGPIGPPGPQGEQ 858
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 33.5 bits (75), Expect = 0.35
Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 6 PLGPRLGSEPLNHPPGAPREADIVGCTVCPA-SGEESTSPEQAQTLGQDSLGPPEHFQG- 63
P GP G EP P P + PA S E+ P A G + P G
Sbjct: 566 PAGPA-GDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP 624
Query: 64 ---GPRGNEPAAHPPRWSTPSSYEDPAGGKHCEHPISG--LEVLEAEQNS 108
GP G+EPA P PS PAG E +G E+ +AE S
Sbjct: 625 RPAGPAGDEPAESPSETPGPS----PAGPTRDEPAKAGEAAELQDAEVES 670
Score = 29.3 bits (64), Expect = 6.6
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 26/86 (30%)
Query: 6 PLGPRLGSEPLNHP---PGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEHFQ 62
P GP G EP P PG PR A PA E + SP + P
Sbjct: 526 PAGPA-GDEPAESPSETPG-PRPAG-------PAGDEPAESPSET----------PGPRP 566
Query: 63 GGPRGNEPAAHPPRWSTPSSYEDPAG 88
GP G+EPA P PS PAG
Sbjct: 567 AGPAGDEPAESPSETPGPS----PAG 588
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 33.5 bits (75), Expect = 0.35
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 6 PLGPRLGSEPLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQD-SLGPPEHFQGG 64
P GP G+ L P R VG + G + +P A G S GP +GG
Sbjct: 24 PDGP--GAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGG 81
Query: 65 PRGNEPAAHPPRWSTP----SSYEDPAGGKHCEHPISGLEVL 102
PR P+A PPR S P +S + P G E P+ L+ L
Sbjct: 82 PRDPGPSAPPPR-SGPRGQLASPDAPGPGPRSEAPLPELDPL 122
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.5 bits (75), Expect = 0.35
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPA--------------GDIGGLGPLGQKTAR 267
GD G G+ G P P + + DP GD+G +GP G K R
Sbjct: 2569 GDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGER 2628
Query: 268 TLGVPCELCGQRGPQGRGQGLEEADTSHSRQDMLESGLGHQ 308
+ C L G++G +G + + +M E G+ Q
Sbjct: 2629 GVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQ 2669
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 33.5 bits (75), Expect = 0.35
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 227 PGPGGVWGPWAPSSL--PTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQG 283
PGP G GP P L P T+ P G G G G+K A +G P G RGP G
Sbjct: 534 PGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGA--MGEP----GPRGPYG 586
Score = 28.9 bits (63), Expect = 8.7
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 200 QLVSYSLVFEEANTLDQDLEVEGDSDWPGPGGVWGPWAPSSLPTSTELEWDPA-----GD 254
+++ Y+ EA L V G PGP G+ GP P ++ + GD
Sbjct: 427 EIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGD 486
Query: 255 IGGLGPLGQKTARTLGVPCELCGQRGPQG 283
+G G G+K +G+P L G G +G
Sbjct: 487 MGDPGMTGEKGG--IGLP-GLPGANGMKG 512
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 33.5 bits (75), Expect = 0.35
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 227 PGPGGVWGPWAPSSL--PTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQG 283
PGP G GP P L P T+ P G G G G+K A +G P G RGP G
Sbjct: 534 PGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGA--MGEP----GPRGPYG 586
Score = 28.9 bits (63), Expect = 8.7
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 200 QLVSYSLVFEEANTLDQDLEVEGDSDWPGPGGVWGPWAPSSLPTSTELEWDPA-----GD 254
+++ Y+ EA L V G PGP G+ GP P ++ + GD
Sbjct: 427 EIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGD 486
Query: 255 IGGLGPLGQKTARTLGVPCELCGQRGPQG 283
+G G G+K +G+P L G G +G
Sbjct: 487 MGDPGMTGEKGG--IGLP-GLPGANGMKG 512
>gi|8659574 transcription factor E3 [Homo sapiens]
Length = 575
Score = 33.1 bits (74), Expect = 0.46
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 3 LSLPLGPRLGSEPLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGP 57
LS LGP+L S+ L PPG PAS + +PE A T G P
Sbjct: 203 LSTTLGPKLASQALTPPPG-------------PASAQPLPAPEAAHTTGPTGSAP 244
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 33.1 bits (74), Expect = 0.46
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 8 GPRLGS-EPLNHPPGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSLGPPEHFQGGPR 66
GP GS +P HPPG +E P E++ T G SL GGP
Sbjct: 178 GPSDGSPQPCTHPPGPVKE---------PQEKEDADGERADSTYGSSSLTYTLSLLGGPE 228
Query: 67 GNEPAAHPP 75
+PA P
Sbjct: 229 AEDPAPRLP 237
>gi|11119430 testis-specific kinase substrate [Homo sapiens]
Length = 592
Score = 33.1 bits (74), Expect = 0.46
Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 33/176 (18%)
Query: 39 EESTSPEQAQT----LGQDSLGPPEHFQG--GPRGNEPAAHPPRWSTPSSYE-DPAGGK- 90
EE PE+ Q L +SLGP QG GP G+ P P+ + P G+
Sbjct: 253 EEKQEPEEKQKPEAGLSWNSLGPAATSQGCPGPPGSPDKPSRPHGLVPAGWGMGPRAGEG 312
Query: 91 ------HCEHPISGLEVLEAEQNSLHL--------------CLLGLGRRLQDLEQGLGHW 130
+ +G+E L E +SL L GLG R+ LG W
Sbjct: 313 PYVSEQELQKLFTGIEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRVDGF---LGQW 369
Query: 131 ALAQSGMVQLQALQVDLRGAAERVEALL--AFGEGLAQRSEPRAWAALEQILRALG 184
AQ Q +LRG A+ + ++ + + RSE L+ IL G
Sbjct: 370 ERAQREQAQTARDLQELRGRADELCTMVERSAVSVASLRSELEGLGPLKPILEEFG 425
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 33.1 bits (74), Expect = 0.46
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 227 PGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQGRG 285
PGP G GP P+ LP E+ + G G GP G G P G RGP G G
Sbjct: 832 PGPPGAPGPAGPAGLPGHQEV-LNLQGPPGPPGPRGPPGPSIPGPP----GPRGPPGEG 885
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 32.7 bits (73), Expect = 0.60
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 217 DLEVEGDSDW---PGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVP- 272
D+ ++GD PGP G GP P P GD G LGP G+K LGVP
Sbjct: 821 DMGIKGDRGEIGPPGPRGEDGPEGPKG-------RGGPNGDPGPLGPPGEK--GKLGVPG 871
Query: 273 -CELCGQRGPQG 283
G++GP+G
Sbjct: 872 LPGYPGRQGPKG 883
Score = 32.0 bits (71), Expect = 1.0
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGP 281
GD GP G GP PS P + P G IG G +G+K L G+ GP
Sbjct: 1243 GDVGQMGPPGPPGPRGPSGAP-GADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGP 1301
Query: 282 QG-RGQGLEEADTSHS 296
G +G+ E+ ++ S
Sbjct: 1302 PGPKGERGEKGESGPS 1317
Score = 30.4 bits (67), Expect = 3.0
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 227 PGPGGVWGPWAPSSLP-----TSTELEWDPAGDIGGLGP---LGQKTARTLGVPCELCGQ 278
PGP G GP P LP + + E G IG +GP G+K R L P G
Sbjct: 1455 PGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGP 1514
Query: 279 RGPQG 283
+G QG
Sbjct: 1515 KGEQG 1519
Score = 29.6 bits (65), Expect = 5.1
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 221 EGDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRG 280
+G + PGP GV GP P+ E P G+ G GP G + G+P L G+ G
Sbjct: 987 QGKTGPPGPPGVVGPQGPTG-------ETGPMGERGHPGPPGPPGEQ--GLP-GLAGKEG 1036
Query: 281 PQG 283
+G
Sbjct: 1037 TKG 1039
Score = 29.6 bits (65), Expect = 5.1
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 222 GDSDWPGPGGVWGPWAPSSLPTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGP 281
GD PGP G G P PAG G GP G A +G+P G+ GP
Sbjct: 1060 GDRGLPGPVGALGLKGNEGPPGPP----GPAGSPGERGPAG--AAGPIGIP----GRPGP 1109
Query: 282 QG 283
QG
Sbjct: 1110 QG 1111
Score = 29.3 bits (64), Expect = 6.6
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 20 PGAPREADIVGCTVCPASGEESTSPEQAQTLGQDSL-------GPPEH-FQGGPRGNEPA 71
PG P + G P P + LG+ L GPP H + GP G +
Sbjct: 717 PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGG 776
Query: 72 AHPPRWSTPSSYEDPAGGKHCEHPISGLEVLEAEQ 106
PP P Y P G K + I GL+ + E+
Sbjct: 777 QGPPGPQGPIGYPGPRGVKGAD-GIRGLKGTKGEK 810
Score = 29.3 bits (64), Expect = 6.6
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 227 PGPGGVWGPWAPSSL--PTSTELEWDPAGDIGGLGPLGQKTARTLGVPCELCGQRGPQG 283
PGP G GP P P + P G+ GG GP G R P G GP+G
Sbjct: 906 PGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKG 964
>gi|38788219 zinc finger protein 428 [Homo sapiens]
Length = 188
Score = 32.3 bits (72), Expect = 0.78
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 12 GSEPLNH-PPGAPREADIVGCTVC-PASGEESTSPEQAQTLGQDSLGPPEHFQGGPRGNE 69
G PL PPG P C +C PA+ + + + LG++ PP +G P G E
Sbjct: 97 GRSPLGEAPPGTPP------CRLCCPATAPQEAPAPEGRALGEEEEEPPRAGEGRPAGRE 150
>gi|169210212 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 32.3 bits (72), Expect = 0.78
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 230 GGVWGPWAP----SSLPTSTELE----------WDPAGDIGGLGP--LGQKTARTLGVPC 273
GG W P P S LP W P GLGP +G + R L + C
Sbjct: 104 GGTWTPRLPPTLVSRLPAPVRCPPAKGASLLHPWSPPTQASGLGPQAVGGRQDRALQLAC 163
Query: 274 ELCGQRGPQ 282
E+ RGPQ
Sbjct: 164 EVGPGRGPQ 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,200,058
Number of Sequences: 37866
Number of extensions: 1174489
Number of successful extensions: 5187
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 4727
Number of HSP's gapped (non-prelim): 570
length of query: 404
length of database: 18,247,518
effective HSP length: 105
effective length of query: 299
effective length of database: 14,271,588
effective search space: 4267204812
effective search space used: 4267204812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.