Guide to the Human Genome
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Name: TFE3 Sequence: fasta or formatted (575aa) NCBI GI: 8659574
Description:

transcription factor E3

Referenced in:

E2F Pathways
Kidney
Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         57           4
 C cysteine            0.2          1           1
 D aspartate           4.2         24           2
 E glutamate           8.0         46           4
 F phenylalanine       1.4          8           1
 G glycine             6.1         35           3
 H histidine           2.1         12           1
 I isoleucine          3.8         22           2
 K lysine              3.3         19           2
 L leucine            12.2         70           2
 M methionine          1.4          8           1
 N asparagine          2.6         15           1
 P proline             9.9         57           3
 Q glutamine           5.9         34           2
 R arginine            6.3         36           4
 S serine             12.5         72           6
 T threonine           4.5         26           2
 V valine              4.3         25           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor E3 
MITF                  0.388   microphthalmia-associated transcription factor isofo...
MITF                  0.375   microphthalmia-associated transcription factor isofo...
MITF                  0.374   microphthalmia-associated transcription factor isofo...
MITF                  0.373   microphthalmia-associated transcription factor isofo...
MITF                  0.317   microphthalmia-associated transcription factor isofo...
MITF                  0.312   microphthalmia-associated transcription factor isofor...
TFEB                  0.294   transcription factor EB 
TFEC                  0.213   transcription factor EC isoform a 
TFEC                  0.192   transcription factor EC isoform b 
SREBF1                0.033   sterol regulatory element binding transcription fact...
SREBF1                0.033   sterol regulatory element binding transcription fact...
USF2                  0.029   upstream stimulatory factor 2 isoform 1 
SREBF2                0.028   sterol regulatory element-binding transcription fact...
USF2                  0.028   upstream stimulatory factor 2 isoform 2 
MYCN                  0.026   v-myc myelocytomatosis viral related oncogene, neuro...
USF1                  0.026   upstream stimulatory factor 1 isoform 1 
USF1                  0.026   upstream stimulatory factor 1 isoform 2 
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
BSN                   0.023   bassoon protein 
KIAA2018              0.022   hypothetical protein LOC205717 
MXI1                  0.021   MAX interactor 1 isoform b 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
MNT                   0.020   MAX binding protein 
CLOCK                 0.019   clock 
ARNT                  0.018   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.018   aryl hydrocarbon receptor nuclear translocator isofor...
MXD4                  0.017   MAD4 
YLPM1                 0.017   YLP motif containing 1 
ENAH                  0.017   enabled homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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