Guide to the Human Genome
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Name: SMTN Sequence: fasta or formatted (940aa) NCBI GI: 19913398
Description:

smoothelin isoform a

Referenced in:

Muscle

Other entries for this name:
alt prot [917aa] smoothelin isoform c
alt prot [915aa] smoothelin isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         98           3
 C cysteine            1.1         10           1
 D aspartate           3.8         36           2
 E glutamate           9.1         86           3
 F phenylalanine       2.0         19           2
 G glycine             6.9         65           2
 H histidine           1.4         13           1
 I isoleucine          1.7         16           1
 K lysine              4.4         41           3
 L leucine             8.5         80           3
 M methionine          2.0         19           2
 N asparagine          2.3         22           1
 P proline             8.0         75           3
 Q glutamine           5.1         48           2
 R arginine            9.7         91           3
 S serine             11.0        103           6
 T threonine           6.9         65           3
 V valine              4.6         43           2
 W tryptophan          0.4          4           1
 Y tyrosine            0.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   smoothelin isoform a 
SMTN                  0.959   smoothelin isoform c 
SMTN                  0.944   smoothelin isoform b 
SMTNL2                0.115   smoothelin-like 2 isoform 2 
SMTNL2                0.115   smoothelin-like 2 isoform 1 
SMTNL1                0.079   smoothelin-like 1 
CYTSA                 0.044   cytospin A 
CYTSA                 0.044   cytospin A 
ACTN1                 0.039   actinin, alpha 1 isoform c 
ACTN1                 0.039   actinin, alpha 1 isoform a 
ACTN1                 0.039   actinin, alpha 1 isoform b 
EHBP1L1               0.038   tangerin 
CYTSB                 0.037   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.037   spectrin domain with coiled-coils 1 NSP5b3b 
ACTN3                 0.037   actinin, alpha 3 
SPTB                  0.036   spectrin beta isoform a 
SPTB                  0.036   spectrin beta isoform b 
ACTN2                 0.036   actinin, alpha 2 
SPTBN4                0.036   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTBN1                0.035   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.035   spectrin, beta, non-erythrocytic 1 isoform 1 
ACTN4                 0.034   actinin, alpha 4 
SPTBN2                0.032   spectrin, beta, non-erythrocytic 2 
SPTBN5                0.031   spectrin, beta, non-erythrocytic 5 
MICALL2               0.031   MICAL-like 2 isoform 1 
MICALL1               0.031   molecule interacting with Rab13 
MICAL2                0.029   microtubule associated monoxygenase, calponin and LIM...
EHBP1                 0.029   EH domain binding protein 1 isoform 3 
EHBP1                 0.029   EH domain binding protein 1 isoform 3 
EHBP1                 0.029   EH domain binding protein 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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