Guide to the Human Genome
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Name: TSKS Sequence: fasta or formatted (592aa) NCBI GI: 11119430
Description:

testis-specific kinase substrate

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         44           2
 C cysteine            2.2         13           1
 D aspartate           3.9         23           2
 E glutamate          10.5         62           2
 F phenylalanine       0.8          5           1
 G glycine             7.6         45           3
 H histidine           2.4         14           1
 I isoleucine          1.9         11           1
 K lysine              5.6         33           4
 L leucine            12.2         72           3
 M methionine          1.9         11           1
 N asparagine          2.7         16           1
 P proline             6.2         37           2
 Q glutamine           7.3         43           3
 R arginine            6.6         39           3
 S serine              9.0         53           2
 T threonine           5.2         31           1
 V valine              4.9         29           3
 W tryptophan          1.4          8           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis-specific kinase substrate 
CCDC21                0.024   coiled-coil domain containing 21 
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
PLEC1                 0.023   plectin 1 isoform 11 
PLEC1                 0.023   plectin 1 isoform 10 
PLEC1                 0.023   plectin 1 isoform 8 
PLEC1                 0.023   plectin 1 isoform 7 
PLEC1                 0.023   plectin 1 isoform 6 
PLEC1                 0.023   plectin 1 isoform 3 
PLEC1                 0.023   plectin 1 isoform 2 
PLEC1                 0.023   plectin 1 isoform 1 
LOC283685             0.022   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC400352             0.022   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.022   PREDICTED: similar to Putative golgin subfamily A m...
LOC283685             0.021   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PCNT                  0.021   pericentrin 
EEA1                  0.021   early endosome antigen 1, 162kD 
LOC283767             0.020   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.020   PREDICTED: hypothetical protein LOC645202 
PPARGC1B              0.020   peroxisome proliferator-activated receptor gamma, co...
CCDC88B               0.020   coiled-coil domain containing 88 
PHF14                 0.020   PHD finger protein 14 isoform 2 
PHF14                 0.020   PHD finger protein 14 isoform 1 
CCDC102A              0.019   coiled-coil domain containing 102A 
MYH10                 0.019   myosin, heavy polypeptide 10, non-muscle 
LOC440243             0.019   PREDICTED: Putative golgin subfamily A member 6-lik...
CCDC96                0.019   coiled-coil domain containing 96 
FBXO41                0.019   F-box protein 41 
MYH14                 0.018   myosin, heavy chain 14 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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