Guide to the Human Genome
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Name: NFKBIE Sequence: fasta or formatted (500aa) NCBI GI: 71274109
Description:

nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon

Referenced in:

B cells
NF-kappaB Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         55           2
 C cysteine            2.4         12           2
 D aspartate           5.2         26           2
 E glutamate           6.0         30           2
 F phenylalanine       0.4          2           1
 G glycine            10.8         54           4
 H histidine           3.0         15           1
 I isoleucine          1.8          9           1
 K lysine              2.2         11           1
 L leucine            13.8         69           3
 M methionine          1.0          5           1
 N asparagine          1.8          9           2
 P proline             8.8         44           2
 Q glutamine           5.6         28           2
 R arginine            7.8         39           2
 S serine              7.6         38           3
 T threonine           4.8         24           1
 V valine              3.8         19           1
 W tryptophan          1.0          5           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of kappa light polypeptide gene enhan... 
BCL3                  0.145   B-cell CLL/lymphoma 3 
NFKBIA                0.117   nuclear factor of kappa light polypeptide gene enhan...
NFKB1                 0.112   nuclear factor kappa-B, subunit 1 
NFKB2                 0.111   nuclear factor of kappa light polypeptide gene enha...
NFKB2                 0.111   nuclear factor of kappa light polypeptide gene enha...
NFKB2                 0.111   nuclear factor of kappa light polypeptide gene enha...
NFKBIB                0.109   nuclear factor of kappa light polypeptide gene enhan...
NFKBIB                0.089   nuclear factor of kappa light polypeptide gene enhan...
NFKBIZ                0.067   nuclear factor of kappa light polypeptide gene enhan...
NFKBIZ                0.067   nuclear factor of kappa light polypeptide gene enhan...
ANK3                  0.064   ankyrin 3 isoform 1 
ANKDD1A               0.062   ankyrin repeat and death domain containing 1A 
NFKBID                0.061   nuclear factor of kappa light polypeptide gene enhan...
ANK2                  0.060   ankyrin 2 isoform 3 
ANK2                  0.060   ankyrin 2 isoform 2 
ANK2                  0.060   ankyrin 2 isoform 1 
DAPK1                 0.058   death-associated protein kinase 1 
ANKK1                 0.058   ankyrin repeat and kinase domain containing 1 
MIB1                  0.057   mindbomb homolog 1 
ANK1                  0.056   ankyrin 1 isoform 9 
ANK1                  0.056   ankyrin 1 isoform 1 
ANK1                  0.056   ankyrin 1 isoform 3 
ANK1                  0.056   ankyrin 1 isoform 2 
ANK1                  0.056   ankyrin 1 isoform 4 
HACE1                 0.056   HECT domain and ankyrin repeat containing, E3 ubiqu...
ANKRD52               0.056   ankyrin repeat domain 52 
ANKRD6                0.053   ankyrin repeat domain 6 
TNNI3K                0.052   TNNI3 interacting kinase isoform b 
TNNI3K                0.052   TNNI3 interacting kinase isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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