Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAB11FIP3 Sequence: fasta or formatted (756aa) NCBI GI: 7662234
Description:

rab11-family interacting protein 3 isoform 1

Referenced in:

ADP-Ribosylation Factors
Rab

Other entries for this name:
alt prot [460aa] rab11-family interacting protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         61           3
 C cysteine            1.6         12           1
 D aspartate           6.2         47           2
 E glutamate          13.1         99           3
 F phenylalanine       2.6         20           1
 G glycine             8.3         63           2
 H histidine           1.9         14           1
 I isoleucine          3.2         24           2
 K lysine              3.0         23           2
 L leucine            10.3         78           4
 M methionine          1.5         11           1
 N asparagine          2.0         15           1
 P proline             9.3         70           3
 Q glutamine           5.7         43           2
 R arginine            6.1         46           2
 S serine              8.3         63           4
 T threonine           3.7         28           1
 V valine              3.4         26           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rab11-family interacting protein 3 isoform 1 
RAB11FIP3             0.577   rab11-family interacting protein 3 isoform 2 
RAB11FIP4             0.241   RAB11 family interacting protein 4 (class II) 
LOC100133220          0.035   PREDICTED: hypothetical protein 
AZI1                  0.033   5-azacytidine induced 1 isoform b 
COL2A1                0.033   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.033   collagen, type II, alpha 1 isoform 2 precursor [Hom...
CENPF                 0.032   centromere protein F 
PMFBP1                0.031   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.031   polyamine modulated factor 1 binding protein 1 isof...
TMF1                  0.030   TATA element modulatory factor 1 
LOC100133758          0.029   PREDICTED: hypothetical protein, partial 
COL1A1                0.029   alpha 1 type I collagen preproprotein 
CCDC88A               0.029   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.029   coiled-coil domain containing 88A isoform 1 
ERC2                  0.029   cytomatrix protein p110 
EEA1                  0.028   early endosome antigen 1, 162kD 
HOOK3                 0.028   golgi-associated microtubule-binding protein HOOK3 [...
TCHH                  0.028   trichohyalin 
COL5A3                0.027   collagen, type V, alpha 3 preproprotein 
AZI1                  0.027   5-azacytidine induced 1 isoform a 
GOLGA6B               0.027   golgi autoantigen, golgin subfamily a, 6B 
ROCK2                 0.027   Rho-associated, coiled-coil containing protein kinas...
COL3A1                0.026   collagen type III alpha 1 preproprotein 
DST                   0.026   dystonin isoform 1e precursor 
MYH7B                 0.026   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CPSF6                 0.026   cleavage and polyadenylation specific factor 6, 68 ...
LOC647042             0.026   PREDICTED: hypothetical protein isoform 1 
COL7A1                0.026   alpha 1 type VII collagen precursor 
MYH10                 0.026   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press