| Name: PDZD11 | Sequence: fasta or formatted (140aa) | NCBI GI: 7706025 | |
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Description: PDZ domain containing 11
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Referenced in: Iron, Copper, and Arsenic Metabolism
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.4 9 1 C cysteine 0.0 0 0 D aspartate 7.1 10 2 E glutamate 5.7 8 1 F phenylalanine 5.0 7 2 G glycine 5.0 7 2 H histidine 5.0 7 2 I isoleucine 7.1 10 1 K lysine 5.0 7 2 L leucine 6.4 9 1 M methionine 1.4 2 1 N asparagine 4.3 6 2 P proline 9.3 13 2 Q glutamine 5.0 7 1 R arginine 7.1 10 1 S serine 4.3 6 1 T threonine 3.6 5 1 V valine 7.1 10 2 W tryptophan 0.7 1 1 Y tyrosine 4.3 6 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 PDZ domain containing 11 PDZD7 0.168 PDZ domain containing 7 LIN7A 0.157 lin-7 homolog A LIN7B 0.157 lin-7 homolog B LIN7C 0.153 lin-7 homolog C DFNB31 0.146 CASK-interacting protein CIP98 isoform 1 LOC100133567 0.134 PREDICTED: similar to Rap guanine nucleotide exchan... RAPGEF2 0.134 Rap guanine nucleotide exchange factor 2 USH1C 0.131 harmonin isoform b3 USH1C 0.131 harmonin isoform a RAPGEF6 0.116 PDZ domain-containing guanine nucleotide exchange fa... SCRIB 0.116 scribble isoform b SCRIB 0.116 scribble isoform a DLG2 0.112 chapsyn-110 isoform 1 DLG2 0.112 chapsyn-110 isoform 2 TJP3 0.112 tight junction protein 3 LNX2 0.108 ligand of numb-protein X 2 TJP1 0.108 tight junction protein 1 isoform b TJP1 0.108 tight junction protein 1 isoform a DLG4 0.108 post-synaptic density protein 95 isoform 2 DLG1 0.108 discs, large homolog 1 isoform 1 DLG1 0.108 discs, large homolog 1 isoform 2 DLG2 0.108 chapsyn-110 isoform 3 SNTB2 0.108 basic beta 2 syntrophin SNTG2 0.108 syntrophin, gamma 2 DLG4 0.104 post-synaptic density protein 95 isoform 1 INADL 0.104 InaD-like SNTA1 0.104 acidic alpha 1 syntrophin PTPN13 0.104 protein tyrosine phosphatase, non-receptor type 13 i... PTPN13 0.104 protein tyrosine phosphatase, non-receptor type 13 i...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
