Guide to the Human Genome
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Name: SCRIB Sequence: fasta or formatted (1655aa) NCBI GI: 45827731
Description:

scribble isoform a

Referenced in:

Leucine-rich Repeat Family
PDZ Domain

Other entries for this name:
alt prot [1630aa] scribble isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0        166           3
 C cysteine            1.0         17           1
 D aspartate           4.4         73           2
 E glutamate          10.4        172           9
 F phenylalanine       1.6         27           2
 G glycine             8.7        144           3
 H histidine           1.8         29           2
 I isoleucine          2.8         46           1
 K lysine              2.9         48           2
 L leucine            12.9        214           3
 M methionine          0.8         13           1
 N asparagine          2.4         40           2
 P proline             9.8        163           3
 Q glutamine           4.4         72           2
 R arginine            7.7        128           2
 S serine              7.6        125           2
 T threonine           3.6         60           2
 V valine              5.6         93           2
 W tryptophan          0.7         11           1
 Y tyrosine            0.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scribble isoform a 
SCRIB                 0.981   scribble isoform b 
LRRC1                 0.189   leucine rich repeat containing 1 
ERBB2IP               0.112   ERBB2 interacting protein isoform 7 
ERBB2IP               0.112   ERBB2 interacting protein isoform 2 
LRRC7                 0.111   leucine rich repeat containing 7 
SHOC2                 0.052   soc-2 suppressor of clear homolog 
DLG1                  0.043   discs, large homolog 1 isoform 1 
DLG1                  0.043   discs, large homolog 1 isoform 2 
DLG4                  0.042   post-synaptic density protein 95 isoform 1 
DLG4                  0.042   post-synaptic density protein 95 isoform 2 
LOC401387             0.040   leucine-rich repeat and death domain-containing pro...
LRRIQ4                0.040   leucine-rich repeats and IQ motif containing 4 [Hom...
DLG2                  0.039   chapsyn-110 isoform 3 
MPDZ                  0.038   multiple PDZ domain protein 
INADL                 0.038   InaD-like 
DLG3                  0.038   synapse-associated protein 102 isoform a 
MFHAS1                0.038   malignant fibrous histiocytoma amplified sequence 1...
DLG2                  0.037   chapsyn-110 isoform 1 
DLG2                  0.037   chapsyn-110 isoform 2 
LRRC40                0.035   leucine rich repeat containing 40 
FLII                  0.031   flightless I homolog 
LRRC8A                0.030   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.030   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.030   leucine rich repeat containing 8 family, member A [...
LRRC8B                0.029   leucine rich repeat containing 8 family, member B [...
LRRC8B                0.029   leucine rich repeat containing 8 family, member B [H...
LRRC69                0.028   leucine rich repeat containing 69 
LRDD                  0.028   leucine rich repeat and death domain containing prot...
LRDD                  0.028   leucine rich repeat and death domain containing prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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