Guide to the Human Genome
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Name: SNTG2 Sequence: fasta or formatted (539aa) NCBI GI: 9507165
Description:

syntrophin, gamma 2

Referenced in:

PDZ Domain
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         36           2
 C cysteine            2.0         11           2
 D aspartate           5.2         28           2
 E glutamate           5.8         31           2
 F phenylalanine       5.4         29           1
 G glycine             7.1         38           2
 H histidine           2.6         14           1
 I isoleucine          3.0         16           1
 K lysine              5.6         30           1
 L leucine            10.0         54           2
 M methionine          2.4         13           1
 N asparagine          3.2         17           1
 P proline             4.5         24           4
 Q glutamine           4.5         24           1
 R arginine            5.6         30           2
 S serine              9.1         49           2
 T threonine           5.9         32           2
 V valine              7.4         40           2
 W tryptophan          1.9         10           1
 Y tyrosine            2.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syntrophin, gamma 2 
SNTG1                 0.449   syntrophin, gamma 1 
SNTB1                 0.122   basic beta 1 syntrophin 
SNTA1                 0.120   acidic alpha 1 syntrophin 
SNTB2                 0.109   basic beta 2 syntrophin 
GOPC                  0.047   golgi associated PDZ and coiled-coil motif containing...
GOPC                  0.047   golgi associated PDZ and coiled-coil motif containin...
MPDZ                  0.037   multiple PDZ domain protein 
LIN7A                 0.036   lin-7 homolog A 
LIN7C                 0.036   lin-7 homolog C 
LIN7B                 0.036   lin-7 homolog B 
DLG4                  0.036   post-synaptic density protein 95 isoform 1 
DLG4                  0.036   post-synaptic density protein 95 isoform 2 
INADL                 0.036   InaD-like 
MAGI2                 0.034   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.034   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.034   membrane associated guanylate kinase, WW and PDZ dom...
GRIP2                 0.034   glutamate receptor interacting protein 2 
DLG2                  0.033   chapsyn-110 isoform 3 
DLG2                  0.033   chapsyn-110 isoform 1 
DLG2                  0.033   chapsyn-110 isoform 2 
DLG1                  0.032   discs, large homolog 1 isoform 1 
DLG1                  0.032   discs, large homolog 1 isoform 2 
DLG3                  0.032   synapse-associated protein 102 isoform b 
DLG3                  0.032   synapse-associated protein 102 isoform a 
PDZD7                 0.032   PDZ domain containing 7 
USH1C                 0.031   harmonin isoform b3 
USH1C                 0.031   harmonin isoform a 
GRIP1                 0.031   glutamate receptor interacting protein 1 
MAGI1                 0.031   membrane associated guanylate kinase, WW and PDZ dom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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