USH1C 27691

Name: USH1C	Sequence: fasta or formatted (899aa)		NCBI GI: 41281808
Description: harmonin isoform b3		Referenced in: Ankyrin Family Stomach, Small Intestine, and Colon Auditory and Vestibular Functions PDZ Domain
Other entries for this name: alt prot [552aa] harmonin isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 45 3 C cysteine 0.7 6 1 D aspartate 4.9 44 2 E glutamate 9.3 84 4 F phenylalanine 2.9 26 1 G glycine 6.3 57 2 H histidine 2.4 22 1 I isoleucine 5.1 46 1 K lysine 7.7 69 3 L leucine 9.5 85 3 M methionine 2.0 18 1 N asparagine 2.6 23 1 P proline 9.0 81 6 Q glutamine 4.7 42 2 R arginine 6.5 58 2 S serine 7.2 65 3 T threonine 3.7 33 2 V valine 7.2 65 3 W tryptophan 1.0 9 1 Y tyrosine 2.3 21 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 harmonin isoform b3 USH1C 0.429 harmonin isoform a DFNB31 0.065 CASK-interacting protein CIP98 isoform 1 PDZD7 0.046 PDZ domain containing 7 DLG1 0.030 discs, large homolog 1 isoform 2 DLG1 0.030 discs, large homolog 1 isoform 1 SCRIB 0.028 scribble isoform b SCRIB 0.028 scribble isoform a DLG4 0.027 post-synaptic density protein 95 isoform 1 DLG4 0.027 post-synaptic density protein 95 isoform 2 DLG3 0.027 synapse-associated protein 102 isoform a DIAPH1 0.026 diaphanous 1 isoform 2 DIAPH1 0.026 diaphanous 1 isoform 1 MPDZ 0.026 multiple PDZ domain protein LOC283685 0.025 PREDICTED: golgi autoantigen, golgin subfamily a-li... SLC9A3R2 0.024 solute carrier family 9 isoform 3 regulator 2 isofo... SLC9A3R2 0.024 solute carrier family 9 isoform 3 regulator 2 isofor... ENAH 0.024 enabled homolog isoform a ENAH 0.024 enabled homolog isoform b LOC283767 0.023 golgi autoantigen, golgin subfamily a-like INADL 0.023 InaD-like LOC440243 0.022 PREDICTED: Putative golgin subfamily A member 6-lik... LOC283685 0.022 PREDICTED: golgi autoantigen, golgin subfamily a-li... SLC9A3R1 0.022 sodium/hydrogen exchanger regulatory factor 1 IL16 0.021 interleukin 16 isoform 2 FMN2 0.021 formin 2 YLPM1 0.021 YLP motif containing 1 RAPH1 0.020 Ras association and pleckstrin homology domains 1 is... MLL4 0.020 myeloid/lymphoid or mixed-lineage leukemia 4 LOC651807 0.020 PREDICTED: hypothetical protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.