USH1C 35218

Name: USH1C	Sequence: fasta or formatted (552aa)		NCBI GI: 71480164
Description: harmonin isoform a		Referenced in: Ankyrin Family Stomach, Small Intestine, and Colon Auditory and Vestibular Functions PDZ Domain
Other entries for this name: alt prot [899aa] harmonin isoform b3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 29 3 C cysteine 0.7 4 1 D aspartate 6.2 34 2 E glutamate 10.9 60 4 F phenylalanine 2.9 16 2 G glycine 8.3 46 2 H histidine 2.0 11 1 I isoleucine 6.3 35 1 K lysine 7.2 40 2 L leucine 9.6 53 3 M methionine 2.0 11 1 N asparagine 2.4 13 1 P proline 4.3 24 2 Q glutamine 4.9 27 2 R arginine 6.7 37 2 S serine 6.2 34 2 T threonine 2.7 15 1 V valine 8.2 45 3 W tryptophan 0.9 5 1 Y tyrosine 2.4 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 harmonin isoform a USH1C 0.717 harmonin isoform b3 DFNB31 0.109 CASK-interacting protein CIP98 isoform 1 PDZD7 0.078 PDZ domain containing 7 DLG4 0.050 post-synaptic density protein 95 isoform 1 DLG4 0.050 post-synaptic density protein 95 isoform 2 DLG1 0.050 discs, large homolog 1 isoform 1 DLG1 0.050 discs, large homolog 1 isoform 2 SCRIB 0.047 scribble isoform b SCRIB 0.047 scribble isoform a DLG3 0.045 synapse-associated protein 102 isoform a DLG2 0.044 chapsyn-110 isoform 3 MPDZ 0.044 multiple PDZ domain protein SLC9A3R2 0.039 solute carrier family 9 isoform 3 regulator 2 isofo... SLC9A3R2 0.039 solute carrier family 9 isoform 3 regulator 2 isofor... INADL 0.038 InaD-like SLC9A3R1 0.037 sodium/hydrogen exchanger regulatory factor 1 IL16 0.036 interleukin 16 isoform 2 PARD3 0.034 partitioning-defective protein 3 homolog MAGI2 0.033 membrane associated guanylate kinase, WW and PDZ dom... PDZD3 0.033 PDZ domain containing 3 PDZK1 0.033 PDZ domain containing 1 PDZD11 0.033 PDZ domain containing 11 MAGI1 0.032 membrane associated guanylate kinase, WW and PDZ dom... MAGI1 0.032 membrane associated guanylate kinase, WW and PDZ dom... LNX2 0.032 ligand of numb-protein X 2 RAPGEF6 0.031 PDZ domain-containing guanine nucleotide exchange fa... MAGI1 0.031 membrane associated guanylate kinase, WW and PDZ dom... PDZD2 0.031 PDZ domain containing 2 SNTG2 0.031 syntrophin, gamma 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.