Guide to the Human Genome
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Name: TJP1 Sequence: fasta or formatted (1748aa) NCBI GI: 116875767
Description:

tight junction protein 1 isoform a

Referenced in:

Gap Junctions and Tight Junctions
PDZ Domain

Other entries for this name:
alt prot [1668aa] tight junction protein 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5        113           4
 C cysteine            0.3          6           1
 D aspartate           6.2        108           2
 E glutamate           8.0        139           4
 F phenylalanine       2.8         49           1
 G glycine             5.1         89           2
 H histidine           3.3         57           2
 I isoleucine          3.9         68           3
 K lysine              6.1        106           3
 L leucine             6.3        110           2
 M methionine          1.1         19           2
 N asparagine          4.0         70           2
 P proline             9.9        173           5
 Q glutamine           5.0         87           4
 R arginine            6.8        118           2
 S serine             10.3        180           3
 T threonine           4.9         86           3
 V valine              5.9        103           2
 W tryptophan          0.5          9           1
 Y tyrosine            3.3         58           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tight junction protein 1 isoform a 
TJP1                  0.893   tight junction protein 1 isoform b 
TJP2                  0.209   tight junction protein 2 (zona occludens 2) isoform ...
TJP2                  0.205   tight junction protein 2 (zona occludens 2) isoform ...
TJP3                  0.180   tight junction protein 3 
DLG1                  0.036   discs, large homolog 1 isoform 1 
DLG5                  0.036   discs large homolog 5 
DLG1                  0.033   discs, large homolog 1 isoform 2 
DLG3                  0.033   synapse-associated protein 102 isoform a 
DLG4                  0.032   post-synaptic density protein 95 isoform 1 
DLG4                  0.032   post-synaptic density protein 95 isoform 2 
DLG2                  0.032   chapsyn-110 isoform 1 
DLG2                  0.032   chapsyn-110 isoform 2 
DLG2                  0.031   chapsyn-110 isoform 3 
DLG3                  0.029   synapse-associated protein 102 isoform b 
DLG2                  0.021   chapsyn-110 isoform 4 
LOC126987             0.018   PREDICTED: similar to hCG2040319 
LOC126987             0.018   PREDICTED: similar to hCG2040319 
LOC126987             0.018   PREDICTED: similar to hCG2040319 
INADL                 0.017   InaD-like 
MPP5                  0.016   membrane protein, palmitoylated 5 
UNC5C                 0.015   unc5C 
PTPN13                0.015   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.015   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.015   protein tyrosine phosphatase, non-receptor type 13 is...
SCRIB                 0.015   scribble isoform b 
SCRIB                 0.015   scribble isoform a 
PTPN13                0.014   protein tyrosine phosphatase, non-receptor type 13 i...
UNC5B                 0.013   unc-5 homolog B 
MAGI3                 0.013   membrane-associated guanylate kinase-related  3 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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