Guide to the Human Genome
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Name: PTPN13 Sequence: fasta or formatted (2294aa) NCBI GI: 18375648
Description:

protein tyrosine phosphatase, non-receptor type 13 isoform 3

Referenced in:

Cytoskeleton
PDZ Domain
Protein Tyrosine Phosphatases
Rho and Rac

Other entries for this name:
alt prot [2485aa] protein tyrosine phosphatase, non-receptor type 13 isoform 1
alt prot [2490aa] protein tyrosine phosphatase, non-receptor type 13 isoform 4
alt prot [2466aa] protein tyrosine phosphatase, non-receptor type 13 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5        104           2
 C cysteine            1.6         36           1
 D aspartate           6.1        141           3
 E glutamate           7.1        163           3
 F phenylalanine       3.0         69           2
 G glycine             5.9        136           2
 H histidine           2.7         61           2
 I isoleucine          5.4        123           2
 K lysine              6.7        153           3
 L leucine             9.8        225           4
 M methionine          2.0         46           2
 N asparagine          4.0         92           2
 P proline             5.3        122           3
 Q glutamine           5.4        123           2
 R arginine            4.7        107           2
 S serine             10.4        239           4
 T threonine           5.9        135           2
 V valine              6.2        143           2
 W tryptophan          0.7         16           1
 Y tyrosine            2.6         60           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, non-receptor type 13 i... 
PTPN13                0.615   protein tyrosine phosphatase, non-receptor type 13 is...
PTPN13                0.615   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.613   protein tyrosine phosphatase, non-receptor type 13 i...
FRMPD2                0.102   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                0.102   FERM and PDZ domain containing 2 isoform 3 
PTPN20A               0.047   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.047   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.047   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.047   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.047   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.047   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.042   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.042   protein tyrosine phosphatase, non-receptor type 20A...
PTPRH                 0.037   protein tyrosine phosphatase, receptor type, H isof...
PTPRH                 0.037   protein tyrosine phosphatase, receptor type, H isof...
PTPN3                 0.036   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.036   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.036   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.036   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.036   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.036   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN11                0.036   protein tyrosine phosphatase, non-receptor type 11 [...
PTPN4                 0.035   protein tyrosine phosphatase, non-receptor type 4 [Ho...
PTPRF                 0.035   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.035   protein tyrosine phosphatase, receptor type, F isof...
PTPRK                 0.035   protein tyrosine phosphatase, receptor type, K isof...
PTPN6                 0.035   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.035   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.035   protein tyrosine phosphatase, non-receptor type 6 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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