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Search of human proteins with 7242140
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens]
(633 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens] 1249 0.0
gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens] 49 2e-05
gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens] 45 2e-04
gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens] 45 3e-04
gi|21327685 YME1-like 1 isoform 1 [Homo sapiens] 44 3e-04
gi|7657689 YME1-like 1 isoform 3 [Homo sapiens] 44 3e-04
gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens] 43 8e-04
gi|156564401 vesicle-fusing ATPase [Homo sapiens] 42 0.001
gi|40806170 spastin isoform 2 [Homo sapiens] 42 0.001
gi|11875211 spastin isoform 1 [Homo sapiens] 42 0.001
gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens] 42 0.001
gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens] 42 0.002
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 42 0.002
gi|5901990 katanin p60 subunit A 1 [Homo sapiens] 42 0.002
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 41 0.003
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 40 0.005
gi|40806173 spastic paraplegia 7 isoform 2 [Homo sapiens] 40 0.005
gi|31742536 fidgetin-like 1 [Homo sapiens] 40 0.007
gi|112789543 fidgetin-like 1 [Homo sapiens] 40 0.007
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 40 0.009
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens] 40 0.009
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 39 0.011
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 39 0.011
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens] 38 0.025
gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens] 38 0.032
gi|6005942 valosin-containing protein [Homo sapiens] 38 0.032
gi|21396489 mitochondrial lon peptidase 1 [Homo sapiens] 37 0.042
gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens] 37 0.055
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 37 0.072
gi|4505725 peroxin1 [Homo sapiens] 37 0.072
>gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens]
Length = 633
Score = 1249 bits (3233), Expect = 0.0
Identities = 633/633 (100%), Positives = 633/633 (100%)
Query: 1 MPSCGACTCGAAAVRLITSSLASAQRGISGGRIHMSVLGRLGTFETQILQRAPLRSFTET 60
MPSCGACTCGAAAVRLITSSLASAQRGISGGRIHMSVLGRLGTFETQILQRAPLRSFTET
Sbjct: 1 MPSCGACTCGAAAVRLITSSLASAQRGISGGRIHMSVLGRLGTFETQILQRAPLRSFTET 60
Query: 61 PAYFASKDGISKDGSGDGNKKSASEGSSKKSGSGNSGKGGNQLRCPKCGDLCTHVETFVS 120
PAYFASKDGISKDGSGDGNKKSASEGSSKKSGSGNSGKGGNQLRCPKCGDLCTHVETFVS
Sbjct: 61 PAYFASKDGISKDGSGDGNKKSASEGSSKKSGSGNSGKGGNQLRCPKCGDLCTHVETFVS 120
Query: 121 STRFVKCEKCHHFFVVLSEADSKKSIIKEPESAAEAVKLAFQQKPPPPPKKIYNYLDKYV 180
STRFVKCEKCHHFFVVLSEADSKKSIIKEPESAAEAVKLAFQQKPPPPPKKIYNYLDKYV
Sbjct: 121 STRFVKCEKCHHFFVVLSEADSKKSIIKEPESAAEAVKLAFQQKPPPPPKKIYNYLDKYV 180
Query: 181 VGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTPRELEIRRREDEYRFTKL 240
VGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTPRELEIRRREDEYRFTKL
Sbjct: 181 VGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTPRELEIRRREDEYRFTKL 240
Query: 241 LQIAGISPHGNALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKSNILLLGPTGSGKT 300
LQIAGISPHGNALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKSNILLLGPTGSGKT
Sbjct: 241 LQIAGISPHGNALGASMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKSNILLLGPTGSGKT 300
Query: 301 LLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVEKAQQGIVFLDEV 360
LLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVEKAQQGIVFLDEV
Sbjct: 301 LLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVEKAQQGIVFLDEV 360
Query: 361 DKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVDTTNILFVAS 420
DKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVDTTNILFVAS
Sbjct: 361 DKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQVDTTNILFVAS 420
Query: 421 GAFNGLDRIISRRKNEKYLGFGTPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLR 480
GAFNGLDRIISRRKNEKYLGFGTPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLR
Sbjct: 421 GAFNGLDRIISRRKNEKYLGFGTPSNLGKGRRAAAAADLANRSGESNTHQDIEEKDRLLR 480
Query: 481 HVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCEL 540
HVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCEL
Sbjct: 481 HVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCEL 540
Query: 541 NVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEP 600
NVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEP
Sbjct: 541 NVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEP 600
Query: 601 GYIRAPTKESSEEEYDSGVEEEGWPRQADAANS 633
GYIRAPTKESSEEEYDSGVEEEGWPRQADAANS
Sbjct: 601 GYIRAPTKESSEEEYDSGVEEEGWPRQADAANS 633
>gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]
Length = 406
Score = 48.5 bits (114), Expect = 2e-05
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 16/108 (14%)
Query: 285 EKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDAN 344
+ +LL GP G+GKTLLA+ +A D F + L Q ++GE A+++++
Sbjct: 182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-FIGEG-----ARMVRELF 235
Query: 345 YNVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEG----VQQGLLKLL 388
+ I+F+DE+D IGS R GG G VQ+ +L+LL
Sbjct: 236 VMAREHAPSIIFMDEIDSIGS------SRLEGGSGGDSEVQRTMLELL 277
>gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]
Length = 403
Score = 45.4 bits (106), Expect = 2e-04
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 290 LLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVEK 349
LL GP G+GKTLLA+ +A LD F +++ Y+GE A+L+++
Sbjct: 185 LLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDK-YIGES-----ARLIREMFNYARD 238
Query: 350 AQQGIVFLDEVDKIG 364
Q I+F+DE+D IG
Sbjct: 239 HQPCIIFMDEIDAIG 253
>gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens]
Length = 439
Score = 44.7 bits (104), Expect = 3e-04
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+L+ GP G+GKTLLA+ A F L Q ++G+ AKL++DA +
Sbjct: 223 VLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQM-FIGDG-----AKLVRDAFALAK 276
Query: 349 KAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETV 408
+ I+F+DE+D IG+ G VQ+ +L+LL + K+ T
Sbjct: 277 EKAPSIIFIDELDAIGTKR--FDSEKAGDREVQRTMLELL-NQLDGFQPNTQVKVIAATN 333
Query: 409 QVDTTNILFVASGAFNGLDRII 430
+VD + + SG LDR I
Sbjct: 334 RVDILDPALLRSGR---LDRKI 352
>gi|21327685 YME1-like 1 isoform 1 [Homo sapiens]
Length = 773
Score = 44.3 bits (103), Expect = 3e-04
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342
KL K ILL+GP G+GKTLLA+ +A DVPF + + +VG S I L ++
Sbjct: 370 KLPKG-ILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVG-ASRIRNLFRE 426
Query: 343 ANYNVEKAQQGIVFLDEVDKIG 364
A N ++F+DE+D +G
Sbjct: 427 AKANA----PCVIFIDELDSVG 444
>gi|7657689 YME1-like 1 isoform 3 [Homo sapiens]
Length = 716
Score = 44.3 bits (103), Expect = 3e-04
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342
KL K ILL+GP G+GKTLLA+ +A DVPF + + +VG S I L ++
Sbjct: 313 KLPKG-ILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVG-ASRIRNLFRE 369
Query: 343 ANYNVEKAQQGIVFLDEVDKIG 364
A N ++F+DE+D +G
Sbjct: 370 AKANA----PCVIFIDELDSVG 387
>gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]
Length = 440
Score = 43.1 bits (100), Expect = 8e-04
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
++L GP G+GKTLLA+ +A F + L Q Y+G+ KL+++ E
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDG-----PKLVRELFRVAE 275
Query: 349 KAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLL 388
+ IVF+DE+D IG+ + G +Q+ +L+LL
Sbjct: 276 EHAPSIVFIDEIDAIGTKR--YDSNSGGEREIQRTMLELL 313
>gi|156564401 vesicle-fusing ATPase [Homo sapiens]
Length = 744
Score = 42.4 bits (98), Expect = 0.001
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDV--PFAICDCTTLTQAGYVGEDIESVIAKLLQDANYN 346
ILL GP G GKTLLA+ + K L+ P + L + YVGE E+ I KL DA
Sbjct: 256 ILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNK--YVGES-EANIRKLFADAEEE 312
Query: 347 VEK--AQQG--IVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRK 402
+ A G I+ DE+D I G G GV ++ L I V + N+
Sbjct: 313 QRRLGANSGLHIIIFDEIDAICKQRG----SMAGSTGVHDTVVNQLLSKIDGVEQLNNIL 368
Query: 403 LRGETVQVD 411
+ G T + D
Sbjct: 369 VIGMTNRPD 377
Score = 32.0 bits (71), Expect = 1.8
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 288 NILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 347
++LL GP SGKT LA +A+ + PF I C+ G+ + K+ DA
Sbjct: 538 SVLLEGPPHSGKTALAAKIAEESNFPF-IKICSPDKMIGFSETAKCQAMKKIFDDA---- 592
Query: 348 EKAQQGIVFLDEVDKI 363
K+Q V +D+++++
Sbjct: 593 YKSQLSCVVVDDIERL 608
>gi|40806170 spastin isoform 2 [Homo sapiens]
Length = 584
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+LL GP G+GKT+LA+ +A + F +LT + YVGE E ++ L A
Sbjct: 346 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT-SKYVGEG-EKLVRALFAVA----R 399
Query: 349 KAQQGIVFLDEVDKI 363
+ Q I+F+DEVD +
Sbjct: 400 ELQPSIIFIDEVDSL 414
>gi|11875211 spastin isoform 1 [Homo sapiens]
Length = 616
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+LL GP G+GKT+LA+ +A + F +LT + YVGE E ++ L A
Sbjct: 378 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT-SKYVGEG-EKLVRALFAVA----R 431
Query: 349 KAQQGIVFLDEVDKI 363
+ Q I+F+DEVD +
Sbjct: 432 ELQPSIIFIDEVDSL 446
>gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens]
Length = 361
Score = 42.4 bits (98), Expect = 0.001
Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 40/201 (19%)
Query: 180 VVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTPRELEIRRREDEYRFTK 239
VVG F + Y K + + I +Q+ E +KQ +++ ++ +
Sbjct: 16 VVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQAEKLMKQIGVKNVK------- 68
Query: 240 LLQIAGISPHGNALGASMQQQVNQQIPQEKRGGEVLDSSHDDIK------------LEKS 287
+S + ++ A + +N + G LD D+K E S
Sbjct: 69 ------LSEYEMSIAAHLVDPLNMHVTWSDIAG--LDDVITDLKDTVILPIKKKHLFENS 120
Query: 288 N-------ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLL 340
+LL GP G GKTL+A+ AK F +TLT Y GE KL
Sbjct: 121 RLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY-GES-----QKLA 174
Query: 341 QDANYNVEKAQQGIVFLDEVD 361
K Q I+F+DE+D
Sbjct: 175 AAVFSLAIKLQPSIIFIDEID 195
>gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]
Length = 433
Score = 42.0 bits (97), Expect = 0.002
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+LL GP G+GKTL A+ +A D F + L Q YVGE A+++++
Sbjct: 212 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGEG-----ARMVRELFEMAR 265
Query: 349 KAQQGIVFLDEVDKIGSVPGIHQLRDVGGEG-VQQGLLKLL 388
+ ++F DE+D IG G GG+ VQ+ +L+L+
Sbjct: 266 TKKACLIFFDEIDAIG---GARFDDGAGGDNEVQRTMLELI 303
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 41.6 bits (96), Expect = 0.002
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 32/160 (20%)
Query: 249 HGNALGASMQQQVN-------QQIPQEKRGGEVLDSSHDDIK---LEKSNILLLGPTGSG 298
H A+GA V+ Q++ +E L H ++ L +S +LL GP G+G
Sbjct: 690 HSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLSLGLRRSGLLLHGPPGTG 749
Query: 299 KTLLAQTLAKCLDVPFAICDCTTLTQAG------YVGEDIESVIAKLLQDANYNVEKAQQ 352
KTLLA+ +A C T L+ G YVG+ E+V ++ A
Sbjct: 750 KTLLAKAVA-------TECSLTFLSVKGPELINMYVGQSEENV-----REVFARARAAAP 797
Query: 353 GIVFLDEVDKIGSVPGIHQLRDVGG--EGVQQGLLKLLEG 390
I+F DE+D + P + D GG + V LL L+G
Sbjct: 798 CIIFFDELDSL--APSRGRSGDSGGVMDRVVSQLLAELDG 835
Score = 31.6 bits (70), Expect = 2.3
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 26/137 (18%)
Query: 266 PQEKRGGEVLDSSHDDIKLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTL--T 323
P+ + GG +L + S++LL GP G GKT + L + C++L
Sbjct: 451 PRLQPGGALLTGT--------SSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAE 502
Query: 324 QAGYVGEDIESVIAKLLQDANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQG 383
+G V ++++ ++ + + ++ L VD +G RD G G
Sbjct: 503 SSGAVETKLQAIFSR--------ARRCRPAVLLLTAVDLLG--------RDRDGLGEDAR 546
Query: 384 LLKLLEGTIVNVPEKNS 400
++ +L ++N NS
Sbjct: 547 VMAVLRHLLLNEDPLNS 563
>gi|5901990 katanin p60 subunit A 1 [Homo sapiens]
Length = 491
Score = 41.6 bits (96), Expect = 0.002
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 24/164 (14%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+L++GP G+GKTLLA+ +A F +TLT + Y GE E ++ L + A +
Sbjct: 245 VLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLT-SKYRGES-EKLVRLLFEMARF--- 299
Query: 349 KAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETV 408
+F+DE+D I S G + + V+ LL ++G G T
Sbjct: 300 -YSPATIFIDEIDSICSRRGTSEEHE-ASRRVKAELLVQMDGV-------------GGTS 344
Query: 409 QVDTTNILFVASGAFN---GLDRIISRRKNEKYLGFGTPSNLGK 449
+ D + + + A N +D + RR+ EK + PS G+
Sbjct: 345 ENDDPSKMVMVLAATNFPWDIDEAL-RRRLEKRIYIPLPSAKGR 387
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 41.2 bits (95), Expect = 0.003
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDV--PFAICDCTTLTQAGYVGEDIESVIAKLLQDANYN 346
ILL GP G GKTLLA+ + K L+ P + L + YVGE E+ I KL DA
Sbjct: 329 ILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNK--YVGES-EANIRKLFADAEEE 385
Query: 347 VEK--AQQG--IVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRK 402
+ A G I+ DE+D I G G GV ++ L I + + N+
Sbjct: 386 QRRLGANSGLHIIIFDEIDAICKQRG----SMAGSTGVHDTVVNQLLSKIDGMEQLNNIL 441
Query: 403 LRGETVQVD 411
+ G T + D
Sbjct: 442 VIGMTNRPD 450
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 40.4 bits (93), Expect = 0.005
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 285 EKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAG------YVGEDIESVIAK 338
+ +LL GP G KT L + LA C C+ ++ +G +VG D E V+++
Sbjct: 497 QPKGVLLYGPPGCAKTTLVRALA-------TSCHCSFVSVSGADLFSPFVG-DSEKVLSQ 548
Query: 339 LLQDANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGT-IVNVPE 397
+ + A + I+FLDE+D I + E V LL L+G + +
Sbjct: 549 IFRQA----RASTPAILFLDEIDSILGARSASKTGCDVQERVLSVLLNELDGVGLKTIER 604
Query: 398 KNSRKLRGETVQVDTTNILFVAS 420
+ S+ + E +V +++ +A+
Sbjct: 605 RGSKSSQQEFQEVFNRSVMIIAA 627
Score = 30.4 bits (67), Expect = 5.2
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+LL GP G GKT L + +A+ L Q GE E+V ++ Q A E
Sbjct: 237 VLLAGPPGVGKTQLVRAVAREAGAELLAVSAPAL-QGSRPGETEENV-RRVFQRAR---E 291
Query: 349 KAQQG--IVFLDEVDKI 363
A +G ++FLDE+D +
Sbjct: 292 LASRGPSLLFLDEMDAL 308
>gi|40806173 spastic paraplegia 7 isoform 2 [Homo sapiens]
Length = 489
Score = 40.4 bits (93), Expect = 0.005
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 290 LLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAG-YVGEDIESVIAKLLQDANYNVE 348
LLLGP G GKTLLA+ +A VPF L AG E I + A ++
Sbjct: 346 LLLGPPGCGKTLLAKAVATEAQVPF-------LAMAGPEFVEVIGGLGAARVRSLFKEAR 398
Query: 349 KAQQGIVFLDEVDKIG-----SVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNS-RK 402
IV++DE+D +G ++ G + + + Q L+++ ++ +P + + RK
Sbjct: 399 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEE--EQTLNQLLVEMDGASLDQLPSQGTMRK 456
Query: 403 LRGET 407
LRG+T
Sbjct: 457 LRGKT 461
>gi|31742536 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 40.0 bits (92), Expect = 0.007
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
ILL GP G+GKTL+ + +A F ++LT + +VGE + V A + V
Sbjct: 437 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEGEKMV------RALFAVA 489
Query: 349 KAQQ-GIVFLDEVDKIGSVPG 368
+ QQ ++F+DE+D + S G
Sbjct: 490 RCQQPAVIFIDEIDSLLSQRG 510
>gi|112789543 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 40.0 bits (92), Expect = 0.007
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
ILL GP G+GKTL+ + +A F ++LT + +VGE + V A + V
Sbjct: 437 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEGEKMV------RALFAVA 489
Query: 349 KAQQ-GIVFLDEVDKIGSVPG 368
+ QQ ++F+DE+D + S G
Sbjct: 490 RCQQPAVIFIDEIDSLLSQRG 510
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 39.7 bits (91), Expect = 0.009
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+L++GP G+GKT+LA+ +A F +TLT + Y GE E ++ L + A +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLT-SKYRGES-EKLVRLLFEMARFYAP 301
Query: 349 KAQQGIVFLDEVDKIGSVPG 368
+F+DE+D I S G
Sbjct: 302 TT----IFIDEIDSICSRRG 317
>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 39.7 bits (91), Expect = 0.009
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+L++GP G+GKT+LA+ +A F +TLT + Y GE E ++ L + A +
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLT-SKYRGES-EKLVRLLFEMARFYAP 301
Query: 349 KAQQGIVFLDEVDKIGSVPG 368
+F+DE+D I S G
Sbjct: 302 TT----IFIDEIDSICSRRG 317
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 39.3 bits (90), Expect = 0.011
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+LL GP G GKTLLA +A LD+P + +G GE E + +L + A N
Sbjct: 195 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIV-SGVSGES-EQKLRELFEQAVSNA- 251
Query: 349 KAQQGIVFLDEVDKI 363
I+F+DE+D I
Sbjct: 252 ---PCIIFIDEIDAI 263
Score = 35.8 bits (81), Expect = 0.12
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 287 SNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYN 346
+ +LL GP G GKTLLA+ +A + F L YVGE E + ++ Q A
Sbjct: 510 AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGES-ERAVRQVFQRA--- 564
Query: 347 VEKAQQGIVFLDEVDKI 363
+ + ++F DEVD +
Sbjct: 565 -KNSAPCVIFFDEVDAL 580
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 39.3 bits (90), Expect = 0.011
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
+LL GP G GKTLLA +A LD+P + +G GE E + +L + A N
Sbjct: 301 VLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIV-SGVSGES-EQKLRELFEQAVSNA- 357
Query: 349 KAQQGIVFLDEVDKI 363
I+F+DE+D I
Sbjct: 358 ---PCIIFIDEIDAI 369
Score = 35.8 bits (81), Expect = 0.12
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 287 SNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYN 346
+ +LL GP G GKTLLA+ +A + F L YVGE E + ++ Q A
Sbjct: 616 AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGES-ERAVRQVFQRA--- 670
Query: 347 VEKAQQGIVFLDEVDKI 363
+ + ++F DEVD +
Sbjct: 671 -KNSAPCVIFFDEVDAL 686
>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
Length = 797
Score = 38.1 bits (87), Expect = 0.025
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 290 LLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVEK 349
+L GP G+GKTLLA+ A +VPF T++ + ++ E V ++D K
Sbjct: 345 ILTGPPGTGKTLLAKATAGEANVPF-----ITVSGSEFL-EMFVGVGPARVRDLFALARK 398
Query: 350 AQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLL 388
I+F+DE+D +G G + GG+ Q+ L L
Sbjct: 399 NAPCILFIDEIDAVGRKRG---RGNFGGQSEQENTLNQL 434
>gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens]
Length = 466
Score = 37.7 bits (86), Expect = 0.032
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 289 ILLLGPTGSGKTLLAQTLA-KCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 347
+LL GP G+GKTLLA+ +A +C F I T +++ + G D E ++ L + A Y+
Sbjct: 218 LLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSK--WRG-DSEKLVRVLFELARYHA 274
Query: 348 EKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNV 395
+FLDE++ + S G GGE +G L++ +V +
Sbjct: 275 PST----IFLDELESVMSQRGTAS----GGE--HEGSLRMKTELLVQM 312
>gi|6005942 valosin-containing protein [Homo sapiens]
Length = 806
Score = 37.7 bits (86), Expect = 0.032
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNVE 348
ILL GP G+GKTL+A+ +A F + + + + GE ES + K ++A E
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEA----E 294
Query: 349 KAQQGIVFLDEVDKI 363
K I+F+DE+D I
Sbjct: 295 KNAPAIIFIDELDAI 309
Score = 33.1 bits (74), Expect = 0.80
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 289 ILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV- 347
+L GP G GKTLLA+ +A +C QA ++ ++ ++ NV
Sbjct: 514 VLFYGPPGCGKTLLAKAIAN---------EC----QANFISIKGPELLTMWFGESEANVR 560
Query: 348 ---EKAQQG---IVFLDEVDKIGSVPGIHQLRDVGG 377
+KA+Q ++F DE+D I G + D GG
Sbjct: 561 EIFDKARQAAPCVLFFDELDSIAKARG-GNIGDGGG 595
>gi|21396489 mitochondrial lon peptidase 1 [Homo sapiens]
Length = 959
Score = 37.4 bits (85), Expect = 0.042
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 22/133 (16%)
Query: 293 GPTGSGKTLLAQTLAKCLD---VPFAICDCTTLTQ-AGYVGEDIESVIAKLLQDANYNVE 348
GP G GKT +A+++A+ L+ F++ T + + G+ + ++ K++Q
Sbjct: 523 GPPGVGKTSIARSIARALNREYFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKT-- 580
Query: 349 KAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKL-RGET 407
K + ++ +DEVDKIG R G+ LL+LL+ PE+N+ L
Sbjct: 581 KTENPLILIDEVDKIG--------RGYQGD-PSSALLELLD------PEQNANFLDHYLD 625
Query: 408 VQVDTTNILFVAS 420
V VD + +LF+ +
Sbjct: 626 VPVDLSKVLFICT 638
Score = 34.7 bits (78), Expect = 0.27
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 525 VIPQYQALFSMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPNSDI 584
++PQ +AL +D+ + ++ D L + + R++G R L+ +EK+L + +++ + +
Sbjct: 674 LVPQARALCGLDESKAKLSSDVLTLLIKQYC-RESGVRNLQKQVEKVLRKSAYKIVSGEA 732
Query: 585 VCVEVDKE 592
VEV E
Sbjct: 733 ESVEVTPE 740
>gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens]
Length = 795
Score = 37.0 bits (84), Expect = 0.055
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 290 LLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAG-YVGEDIESVIAKLLQDANYNVE 348
LLLGP G GKTLLA+ +A VPF L AG E I + A ++
Sbjct: 346 LLLGPPGCGKTLLAKAVATEAQVPF-------LAMAGPEFVEVIGGLGAARVRSLFKEAR 398
Query: 349 KAQQGIVFLDEVDKIG 364
IV++DE+D +G
Sbjct: 399 ARAPCIVYIDEIDAVG 414
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 36.6 bits (83), Expect = 0.072
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 290 LLLGPTGSGKTLLAQTLA-KCLD----VPFAI---CDCTTLTQAGYVGEDIESVIAKLLQ 341
L GP G+GKTL+A+ LA +C V F + DC + +VGE + +LL
Sbjct: 464 LFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCL----SKWVGESERQL--RLLF 517
Query: 342 DANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSR 401
D Y + + I+F DE+D + V Q D + LL L++G
Sbjct: 518 DQAYQM---RPSIIFFDEIDGLAPVRSSRQ--DQIHSSIVSTLLALMDGL---------- 562
Query: 402 KLRGETVQVDTTNIL 416
RGE V + TN L
Sbjct: 563 DSRGEIVVIGATNRL 577
>gi|4505725 peroxin1 [Homo sapiens]
Length = 1283
Score = 36.6 bits (83), Expect = 0.072
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 285 EKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDAN 344
+++ ILL GP G+GKTLLA +A+ + F L + Y+G ++V +D
Sbjct: 873 QRTGILLYGPPGTGKTLLAGVIARESRMNFISVKGPELL-SKYIGASEQAV-----RDIF 926
Query: 345 YNVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEG 390
+ A+ I+F DE + I G H V V Q LL L+G
Sbjct: 927 IRAQAAKPCILFFDEFESIAPRRG-HDNTGVTDRVVNQ-LLTQLDG 970
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,186,841
Number of Sequences: 37866
Number of extensions: 1124557
Number of successful extensions: 4473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 4343
Number of HSP's gapped (non-prelim): 165
length of query: 633
length of database: 18,247,518
effective HSP length: 108
effective length of query: 525
effective length of database: 14,157,990
effective search space: 7432944750
effective search space used: 7432944750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.