Guide to the Human Genome
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Name: LONP1 Sequence: fasta or formatted (959aa) NCBI GI: 21396489
Description:

mitochondrial lon peptidase 1

Referenced in:

Mitochondria
Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         84           3
 C cysteine            0.9          9           1
 D aspartate           5.1         49           2
 E glutamate           9.3         89           2
 F phenylalanine       2.8         27           1
 G glycine             7.8         75           3
 H histidine           2.2         21           1
 I isoleucine          5.2         50           2
 K lysine              6.7         64           2
 L leucine            10.2         98           2
 M methionine          2.5         24           2
 N asparagine          2.5         24           1
 P proline             5.0         48           2
 Q glutamine           3.4         33           2
 R arginine            6.4         61           2
 S serine              4.9         47           2
 T threonine           4.7         45           1
 V valine              8.0         77           2
 W tryptophan          1.0         10           1
 Y tyrosine            2.5         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial lon peptidase 1 
LONP2                 0.233   peroxisomal LON protease-like 
LOC652826             0.013   PREDICTED: similar to proteasome 26S ATPase subunit ...
PSMC6                 0.013   proteasome 26S ATPase subunit 6 
PSMC4                 0.012   proteasome 26S ATPase subunit 4 isoform 1 
SPG7                  0.012   spastic paraplegia 7 isoform 1 
PSMC4                 0.012   proteasome 26S ATPase subunit 4 isoform 2 
KIF3C                 0.012   kinesin family member 3C 
VCP                   0.011   valosin-containing protein 
GOLGB1                0.011   golgi autoantigen, golgin subfamily b, macrogolgin ...
DCTN1                 0.010   dynactin 1 isoform 4 
DCTN1                 0.010   dynactin 1 isoform 3 
DCTN1                 0.010   dynactin 1 isoform 2 
DCTN1                 0.010   dynactin 1 isoform 1 
KRT9                  0.010   keratin 9 
CLIP1                 0.010   restin isoform b 
CLIP1                 0.010   restin isoform a 
SPAST                 0.010   spastin isoform 2 
SPAST                 0.010   spastin isoform 1 
AFG3L2                0.010   AFG3 ATPase family gene 3-like 2 
PSMC5                 0.009   proteasome 26S ATPase subunit 5 
LRCH2                 0.009   leucine-rich repeats and calponin homology (CH) dom...
CLPB                  0.009   caseinolytic peptidase B 
SPATA5                0.009   spermatogenesis associated 5 
SPATA5L1              0.009   spermatogenesis associated 5-like 1 
VPS4B                 0.009   vacuolar protein sorting factor 4B 
YME1L1                0.009   YME1-like 1 isoform 1 
YME1L1                0.009   YME1-like 1 isoform 3 
TRIP13                0.009   thyroid hormone receptor interactor 13 
PEX6                  0.009   peroxisomal biogenesis factor 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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