Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BCL9 Sequence: fasta or formatted (1426aa) NCBI GI: 72256200
Description:

B-cell CLL/lymphoma 9

Referenced in:

B cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         78           4
 C cysteine            0.3          4           1
 D aspartate           3.2         46           3
 E glutamate           3.7         53           2
 F phenylalanine       2.4         34           1
 G glycine            11.6        166           2
 H histidine           2.3         33           2
 I isoleucine          3.0         43           2
 K lysine              3.4         49           2
 L leucine             5.5         78           1
 M methionine          6.3         90           3
 N asparagine          4.9         70           2
 P proline            17.5        249           5
 Q glutamine           6.9         98           3
 R arginine            4.1         58           2
 S serine             10.6        151           3
 T threonine           4.0         57           2
 V valine              4.0         57           3
 W tryptophan          0.3          4           1
 Y tyrosine            0.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   B-cell CLL/lymphoma 9 
BCL9L                 0.224   B-cell CLL/lymphoma 9-like 
COL4A5                0.035   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.035   type IV collagen alpha 5 isoform 3 precursor 
COL4A5                0.034   type IV collagen alpha 5 isoform 1 precursor 
COL4A1                0.031   alpha 1 type IV collagen preproprotein 
COL4A3                0.030   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.030   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.030   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.030   alpha 3 type IV collagen isoform 1 precursor 
COL4A4                0.030   alpha 4 type IV collagen precursor 
COL27A1               0.030   collagen, type XXVII, alpha 1 
COL11A1               0.030   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.030   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.030   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A1                0.030   alpha 1 type V collagen preproprotein 
COL2A1                0.028   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.027   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.027   collagen type III alpha 1 preproprotein 
COL5A3                0.027   collagen, type V, alpha 3 preproprotein 
COL8A1                0.026   alpha 1 type VIII collagen precursor 
COL8A1                0.026   alpha 1 type VIII collagen precursor 
COL4A6                0.026   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.026   type IV alpha 6 collagen isoform B precursor 
COL1A1                0.026   alpha 1 type I collagen preproprotein 
COL22A1               0.026   collagen, type XXII, alpha 1 
COL5A2                0.025   alpha 2 type V collagen preproprotein 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
COL10A1               0.023   type X collagen alpha 1 precursor 
NACA                  0.022   nascent polypeptide-associated complex alpha subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press