Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PARD3 Sequence: fasta or formatted (1356aa) NCBI GI: 21361831
Description:

partitioning-defective protein 3 homolog

Referenced in:

G Proteins
Gap Junctions and Tight Junctions
PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         77           2
 C cysteine            0.7          9           1
 D aspartate           7.3         99           4
 E glutamate           7.3         99           3
 F phenylalanine       3.0         41           1
 G glycine             7.3         99           2
 H histidine           2.3         31           2
 I isoleucine          3.8         52           2
 K lysine              6.5         88           3
 L leucine             6.4         87           2
 M methionine          2.1         29           2
 N asparagine          4.3         58           2
 P proline             6.0         81           2
 Q glutamine           6.0         81           2
 R arginine            8.1        110           3
 S serine             10.6        144           5
 T threonine           4.5         61           2
 V valine              5.5         75           3
 W tryptophan          0.6          8           1
 Y tyrosine            2.0         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   partitioning-defective protein 3 homolog 
PARD3B                0.190   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.161   par-3 partitioning defective 3 homolog B isoform c ...
PARD3B                0.103   par-3 partitioning defective 3 homolog B isoform b ...
MPDZ                  0.033   multiple PDZ domain protein 
INADL                 0.030   InaD-like 
PTPN13                0.026   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.026   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.026   protein tyrosine phosphatase, non-receptor type 13 is...
PTPN13                0.025   protein tyrosine phosphatase, non-receptor type 13 i...
MAGI1                 0.024   membrane associated guanylate kinase, WW and PDZ dom...
DLG4                  0.023   post-synaptic density protein 95 isoform 1 
DLG4                  0.023   post-synaptic density protein 95 isoform 2 
MAGI3                 0.023   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.023   membrane-associated guanylate kinase-related  3 iso...
LNX2                  0.023   ligand of numb-protein X 2 
DLG2                  0.022   chapsyn-110 isoform 3 
DLG2                  0.022   chapsyn-110 isoform 1 
DLG2                  0.022   chapsyn-110 isoform 2 
MAGI1                 0.022   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.022   membrane associated guanylate kinase, WW and PDZ dom...
DLG3                  0.021   synapse-associated protein 102 isoform a 
DLG1                  0.021   discs, large homolog 1 isoform 1 
DLG1                  0.021   discs, large homolog 1 isoform 2 
LNX1                  0.021   ligand of numb-protein X 1 isoform a 
LNX1                  0.021   ligand of numb-protein X 1 isoform b 
SCRIB                 0.020   scribble isoform b 
SCRIB                 0.020   scribble isoform a 
MAGI2                 0.020   membrane associated guanylate kinase, WW and PDZ dom...
FRMPD2                0.019   FERM and PDZ domain containing 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press