Guide to the Human Genome
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Name: MAGI1 Sequence: fasta or formatted (1256aa) NCBI GI: 66346708
Description:

membrane associated guanylate kinase, WW and PDZ domain containing 1 isoform b

Referenced in:

Gap Junctions and Tight Junctions
PDZ Domain
WW Domain

Other entries for this name:
alt prot [1287aa] membrane associated guanylate kinase, WW and PDZ domain containin...
alt prot [1462aa] membrane associated guanylate kinase, WW and PDZ domain containin...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         64           2
 C cysteine            1.2         15           1
 D aspartate           4.9         61           2
 E glutamate           8.0        101           3
 F phenylalanine       2.9         36           2
 G glycine             9.5        119           5
 H histidine           2.7         34           2
 I isoleucine          4.6         58           2
 K lysine              5.6         70           2
 L leucine             6.9         87           3
 M methionine          1.3         16           1
 N asparagine          4.4         55           1
 P proline             7.4         93           2
 Q glutamine           6.3         79          20
 R arginine            4.7         59           2
 S serine              8.3        104           2
 T threonine           6.2         78           3
 V valine              7.4         93           2
 W tryptophan          0.6          7           1
 Y tyrosine            2.1         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane associated guanylate kinase, WW and PDZ dom... 
MAGI1                 0.984   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.955   membrane associated guanylate kinase, WW and PDZ dom...
MAGI2                 0.377   membrane associated guanylate kinase, WW and PDZ dom...
MAGI3                 0.358   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.357   membrane-associated guanylate kinase-related  3 iso...
MPDZ                  0.041   multiple PDZ domain protein 
INADL                 0.034   InaD-like 
MAGIX                 0.028   MAGI family member, X-linked isoform a 
PTPN13                0.027   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.027   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.027   protein tyrosine phosphatase, non-receptor type 13 is...
PTPN13                0.025   protein tyrosine phosphatase, non-receptor type 13 i...
WWC1                  0.025   WW and C2 domain containing 1 isoform 3 
WWC1                  0.025   WW and C2 domain containing 1 isoform 2 
WWC1                  0.025   WW and C2 domain containing 1 isoform 1 
MAGIX                 0.025   MAGI family member, X-linked isoform b 
WWC2                  0.025   WW and C2 domain containing 2 
DLG4                  0.024   post-synaptic density protein 95 isoform 1 
WWP2                  0.024   WW domain containing E3 ubiquitin protein ligase 2 i...
DLG4                  0.024   post-synaptic density protein 95 isoform 2 
GRIP1                 0.024   glutamate receptor interacting protein 1 
PARD3                 0.023   partitioning-defective protein 3 homolog 
SCRIB                 0.023   scribble isoform b 
SCRIB                 0.023   scribble isoform a 
DLG3                  0.022   synapse-associated protein 102 isoform a 
LNX2                  0.021   ligand of numb-protein X 2 
PDZK1                 0.021   PDZ domain containing 1 
TJP3                  0.021   tight junction protein 3 
FRMPD2                0.021   FERM and PDZ domain containing 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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