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Search of human proteins with 70906441
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|70906441 deoxyuridine triphosphatase isoform 1 precursor
[Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Hom... 511 e-145
gi|4503423 deoxyuridine triphosphatase isoform 2 [Homo sapiens] 321 4e-88
gi|70906444 deoxyuridine triphosphatase isoform 3 [Homo sapiens] 286 2e-77
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.003
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 38 0.010
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.013
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 37 0.013
gi|19923312 v-myc myelocytomatosis viral related oncogene, neuro... 37 0.016
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 37 0.016
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 37 0.016
gi|48762934 alpha 2 type I collagen [Homo sapiens] 37 0.021
gi|91208420 bassoon protein [Homo sapiens] 36 0.028
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 36 0.037
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 36 0.037
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 36 0.037
gi|169171345 PREDICTED: hypothetical protein [Homo sapiens] 36 0.037
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens] 36 0.037
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 36 0.037
gi|169170949 PREDICTED: hypothetical protein [Homo sapiens] 36 0.037
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.048
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.048
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 35 0.048
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 35 0.048
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens] 35 0.048
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.081
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 35 0.081
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 35 0.081
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.081
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 35 0.081
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 35 0.081
>gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Homo
sapiens]
Length = 252
Score = 511 bits (1317), Expect = e-145
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA 60
MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA
Sbjct: 1 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA 60
Query: 61 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS 120
GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS
Sbjct: 61 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS 120
Query: 121 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH 180
EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH
Sbjct: 121 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH 180
Query: 181 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE 240
FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE
Sbjct: 181 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE 240
Query: 241 RGSGGFGSTGKN 252
RGSGGFGSTGKN
Sbjct: 241 RGSGGFGSTGKN 252
>gi|4503423 deoxyuridine triphosphatase isoform 2 [Homo sapiens]
Length = 164
Score = 321 bits (822), Expect = 4e-88
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 94 ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV 153
ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV
Sbjct: 6 ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV 65
Query: 154 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 213
VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK
Sbjct: 66 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 125
Query: 214 GDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN 252
GDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN
Sbjct: 126 GDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN 164
>gi|70906444 deoxyuridine triphosphatase isoform 3 [Homo sapiens]
Length = 141
Score = 286 bits (731), Expect = 2e-77
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 112 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 171
MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA
Sbjct: 1 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 60
Query: 172 PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 231
PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE
Sbjct: 61 PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 120
Query: 232 EVQALDDTERGSGGFGSTGKN 252
EVQALDDTERGSGGFGSTGKN
Sbjct: 121 EVQALDDTERGSGGFGSTGKN 141
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.3 bits (90), Expect = 0.003
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 32 RAEAAVLSGPGPP-----LGRAAQHGIPRPLSSAGRLSQ----GCRGA-STVGAAGWKGE 81
R +A V+ PGP G+A + G+P P + G + G +G G AG +GE
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGE 633
Query: 82 LPKAGGSPAPGPETPAISPSKRARPAEVG 110
AG G PA P + +P E G
Sbjct: 634 QGPAGSPGFQGLPGPAGPPGEAGKPGEQG 662
Score = 37.0 bits (84), Expect = 0.016
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAG----RLSQGCRGASTVGAAGWKGELPKAGGSPAPGPET 95
GP G+ G P P G R G RG GA G G AG +PGP
Sbjct: 461 GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFP--GADGVAGPKGPAGERGSPGPAG 518
Query: 96 PAISPSKRARPAEVG 110
P SP + RP E G
Sbjct: 519 PKGSPGEAGRPGEAG 533
Score = 33.9 bits (76), Expect = 0.14
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLS-QGCRGASTVGAAGWKGELPKAG 86
GAR A +GP P G A G P + + G QG RG+ G G +GE
Sbjct: 320 GARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSE--GPQGVRGE----P 373
Query: 87 GSPAP-GPETPAISPSKRARPAEVG 110
G P P G PA +P +P G
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKG 398
Score = 32.7 bits (73), Expect = 0.31
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRL-SQGCRGASTV-------GAAGWK 79
GA+ A G P G A G P P+ + G ++G RG++ GAAG
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRV 883
Query: 80 GELPKAGGSPAPGPETPAISPSKRARPAEVG 110
G +G + PGP PA + E G
Sbjct: 884 GPPGPSGNAGPPGPPGPAGKEGGKGPRGETG 914
Score = 32.3 bits (72), Expect = 0.40
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 42 GPPLGRAAQHGIPRPLSSAGRLSQGCRGASTV-------GAAGWKGELPKAGGSPAPGPE 94
GPP G G+P G +G RG S + G AG KGE G + APG
Sbjct: 245 GPP-GPQGARGLPGTAGLPGM--KGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM 301
Query: 95 TPAISPSKRARPAEVG 110
P P +R RP G
Sbjct: 302 GPRGLPGERGRPGAPG 317
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 39 SGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETP 96
+GP P G G P P+ AG+ G RG + G AG G + G GP+ P
Sbjct: 1039 TGPAGPPGAPGAPGAPGPVGPAGK--SGDRGET--GPAGPAGPVGPVGARGPAGPQGP 1092
Score = 30.4 bits (67), Expect = 1.5
Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 28/108 (25%)
Query: 31 QRAEAAVLSGPGP--------PLGRAAQHGIPRPLSSAGRLS-------QGCRGAS---- 71
QR E PGP P G + + G P P+ G +G GA
Sbjct: 966 QRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG 1025
Query: 72 ---TVGAAGWKGELPKAG--GSP----APGPETPAISPSKRARPAEVG 110
+ GA G +GE AG G+P APGP PA R G
Sbjct: 1026 RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAG 1073
Score = 29.6 bits (65), Expect = 2.6
Identities = 41/155 (26%), Positives = 54/155 (34%), Gaps = 22/155 (14%)
Query: 38 LSGP-GPP--LGRAAQHGIPRPLSSAGRLSQGCRG----------------ASTVGAAGW 78
L GP GPP G+ + G+P L + G G RG A GA G
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDLGAPG--PSGARGERGFPGERGVQGPPGPAGPRGANGA 702
Query: 79 KGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDL 138
G G + APG +P + P E G L + + A +G+ + G D
Sbjct: 703 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK-GDRGDAGPKGADGSPGKDG 761
Query: 139 YSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPR 173
I P A D + PSG G R
Sbjct: 762 VRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR 796
Score = 29.3 bits (64), Expect = 3.4
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97
+S PGP +G + G+P P + G QG +G GE + G S GP P
Sbjct: 175 ISVPGP-MGPSGPRGLPGPPGAPG--PQGFQGPP--------GEPGEPGASGPMGPRGPP 223
Query: 98 ISPSKRARPAEVG 110
P K E G
Sbjct: 224 GPPGKNGDDGEAG 236
Score = 28.5 bits (62), Expect = 5.8
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 24 QNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELP 83
+ A GA A A G P G G P P ++G G G+ G G KGE
Sbjct: 397 KGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE--PGAPGSK--GDTGAKGEPG 452
Query: 84 KAGGSPAPGPETPAISPSKRARPAEVG 110
G PGP R P G
Sbjct: 453 PVGVQGPPGPAGEEGKRGARGEPGPTG 479
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.7 bits (86), Expect = 0.010
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRL-SQGCRGAS-TVGAAGWKGELPKAGGSPAPGPET 95
+ G P G G P P G +QG G +G G KG L K G PG +
Sbjct: 701 MDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADG 760
Query: 96 PAISPSKRARPAEVGG 111
P P K P E GG
Sbjct: 761 PPGHPGKEGPPGEKGG 776
Score = 33.5 bits (75), Expect = 0.18
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97
++GP P+G G+P P +G +G+S G G KGE G PGP
Sbjct: 1520 ITGPSGPIGPPGPPGLPGPPGP-----KGAKGSS--GPTGPKGEAGHPGPPGPPGPPGEV 1572
Query: 98 ISP 100
I P
Sbjct: 1573 IQP 1575
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 41 PGPP--------LGRAAQHGIPRPLSSAGRLSQ-GCRG-ASTVGAAGWKGELPKAGGSPA 90
PGPP G+ G P P G+ G RG G G G L G
Sbjct: 1020 PGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGP 1079
Query: 91 PGPETPAISPSKRARPAEVGG 111
PGP PA SP +R PA G
Sbjct: 1080 PGPPGPAGSPGERG-PAGAAG 1099
Score = 29.6 bits (65), Expect = 2.6
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAIS 99
GP G + G P P G QG G + G G KG+ AG GP
Sbjct: 1003 GPTGETGPMGERGHPGPPGPPGE--QGLPGLA--GKEGTKGDPGPAGLPGKDGPPGLRGF 1058
Query: 100 PSKRARPAEVGGMQLRFARLSEHATAPT-----RGSARAAG 135
P R P VG + L+ P RG A AAG
Sbjct: 1059 PGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAG 1099
Score = 29.6 bits (65), Expect = 2.6
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97
L GP LG G P P AG S G RG + GAAG G PGP+ P
Sbjct: 1064 LPGPVGALGLKGNEGPPGPPGPAG--SPGERGPA--GAAG------PIGIPGRPGPQGPP 1113
Query: 98 ISPSKRARPAEVG 110
++ P E G
Sbjct: 1114 GPAGEKGAPGEKG 1126
Score = 29.6 bits (65), Expect = 2.6
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 28 GARQRAEAAVLSGP-GPP-----LGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGE 81
G R + A GP GPP G + G P G +G G G KGE
Sbjct: 1255 GPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEG-GPPGPKGERGEKGE 1313
Query: 82 LPKAGGSPAPGPETPAISPSKRARPAEVG 110
+G + PGP+ P + P VG
Sbjct: 1314 SGPSGAAGPPGPKGPPGDDGPKGSPGPVG 1342
Score = 29.3 bits (64), Expect = 3.4
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 26 ARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRG-ASTVGAAGWKGELPK 84
A+ Q+A A L GP P+G G P P+ G S G +G VG G +G
Sbjct: 546 AQAILQQARLA-LRGPAGPMGLT---GRPGPVGPPG--SGGLKGEPGDVGPQGPRGVQGP 599
Query: 85 AGGSPAPGPETPAISPSKRARPAEVG 110
G + PG A S R P + G
Sbjct: 600 PGPAGKPGRRGRAGSDGARGMPGQTG 625
Score = 29.3 bits (64), Expect = 3.4
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 40 GPGPPLGRAAQHGI---PRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETP 96
GP P G GI P P ++G G G G +G G + PGP+ P
Sbjct: 913 GPTGPRGERGPRGITGKPGPKGNSG-------GDGPAGPPGERGPNGPQGPTGFPGPKGP 965
Query: 97 AISPSKRARPAEVG 110
P K P G
Sbjct: 966 PGPPGKDGLPGHPG 979
Score = 28.9 bits (63), Expect = 4.5
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLS-------------QGCRGASTVGAAGWKGELPKAG 86
GP P GR +G P PL G QG +G ++G G+ G + G
Sbjct: 841 GPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKG--SIGFPGFPGANGEKG 898
Query: 87 GSPAPGPETP 96
G PG P
Sbjct: 899 GRGTPGKPGP 908
Score = 28.5 bits (62), Expect = 5.8
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAG-RLSQGCRGAS----------------TVGAAGWKG 80
L GP G G+P P S+G + QG G S GA G G
Sbjct: 1490 LIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSG 1549
Query: 81 ELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLR 115
G + PGP P P + +P + + R
Sbjct: 1550 PTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTR 1584
Score = 28.1 bits (61), Expect = 7.6
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 41 PGPP--LGRAAQHGIPRPLSSAGRLSQ----------GCRGAS-TVGAAGWKGELPKAGG 87
PGPP G G+P P + G + G GA G G +G + GG
Sbjct: 717 PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGG 776
Query: 88 SPAPGPETPAISPSKR 103
PGP+ P P R
Sbjct: 777 QGPPGPQGPIGYPGPR 792
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.4 bits (85), Expect = 0.013
Identities = 30/77 (38%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 41 PGPPLGRAAQHGIPR-PLSSAGRLSQGCRGAS-TVGAAGWKGELPKAGGSPAPGPETPAI 98
PGPP G GIP P R G G GA G KGE G + APGP P
Sbjct: 245 PGPP-GIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRG 303
Query: 99 SPSKRARPAEVGGMQLR 115
+P +R RP G R
Sbjct: 304 APGERGRPGLPGAAGAR 320
Score = 32.0 bits (71), Expect = 0.53
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAG----------------RLSQGCRGASTV-GAAGWKG 80
L G G P G + G P P AG R G GA + G AG G
Sbjct: 643 LPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG 702
Query: 81 ELPKAGGSPAPGPETPAISPSKRARPAEVGGM 112
G + PGP A +P + P E GG+
Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGL 734
Score = 31.6 bits (70), Expect = 0.69
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 27 RGAR-QRAEAAVLSGPGPPLGRAAQHGIPRPLSSAG-RLSQGCRGASTVGAAGWKGELPK 84
RGA ++ E GPP G + G P P G R S G GA+ G G +G
Sbjct: 827 RGAPGEKGEGGPPGVAGPP-GGSGPAGPPGPQGVKGERGSPGGPGAA--GFPGARGLPGP 883
Query: 85 AGGSPAPGPETPAISPSKRARPAEVG 110
G + PGP P+ SP K P G
Sbjct: 884 PGSNGNPGPPGPSGSPGKDGPPGPAG 909
Score = 30.0 bits (66), Expect = 2.0
Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 20 RSAMQNARGARQRAEAAVLSG-PGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGW 78
R + A GAR A G PGPP G G P + G + S GA G
Sbjct: 310 RPGLPGAAGARGNDGARGSDGQPGPP-GPPGTAGFPGSPGAKGEVGPAGSPGSN-GAPGQ 367
Query: 79 KGELPKAGGSPAPGPETPAISPSKRARPAEVGGM 112
+GE G + A GP P P P G M
Sbjct: 368 RGEPGPQGHAGAQGPPGP---PGINGSPGGKGEM 398
Score = 29.6 bits (65), Expect = 2.6
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 32 RAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTV-GAAGWKGELPKAGGSPA 90
+ E PG G Q G P P AG +QG G + G+ G KGE+ AG A
Sbjct: 350 KGEVGPAGSPGSN-GAPGQRGEPGPQGHAG--AQGPPGPPGINGSPGGKGEMGPAGIPGA 406
Query: 91 PG 92
PG
Sbjct: 407 PG 408
Score = 29.6 bits (65), Expect = 2.6
Identities = 27/77 (35%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 39 SGPGPPLGRAAQHGIPRPLSSAGRLS-QGCRG----ASTVGAAGWKGELPKAGGSPAPGP 93
SG G A G P P S G QG RG GAAG KG G APG
Sbjct: 1061 SGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120
Query: 94 ETPAISPSKRARPAEVG 110
PA P G
Sbjct: 1121 PGPAGQQGAIGSPGPAG 1137
Score = 29.3 bits (64), Expect = 3.4
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 46 GRAAQHGIPRPLSSAGRLSQGCRGAS-TVGAAGWKGELPKAGGSPAPGPETPAISPSKRA 104
G A G+P P S G QG +G S GA G GE G PG A P +
Sbjct: 957 GLAGPPGMPGPRGSPG--PQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDG 1014
Query: 105 RPAEVG 110
P G
Sbjct: 1015 NPGSDG 1020
Score = 28.9 bits (63), Expect = 4.5
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQ-GCRG-ASTVGAAGWKGELPKAGGSPAPGPETP 96
PGPP G + G P P +G Q G G G G G+ + GG PGP+ P
Sbjct: 551 PGPP-GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGP 607
Score = 28.9 bits (63), Expect = 4.5
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCR--GASTVGAAGWKGELPKAGGSPAPGPET 95
++GP G + G P P G Q G GA G KGE G + PG
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSG 849
Query: 96 PAISPSKRARPAEVG 110
PA P + E G
Sbjct: 850 PAGPPGPQGVKGERG 864
Score = 28.9 bits (63), Expect = 4.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQ----GCRGA-STVGAAGWKGELPKAGGSPAPGPET 95
PGPP G G P P S G+ G GA + G +G KG+ + G +PG +
Sbjct: 881 PGPP-GSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG 939
Query: 96 PAISP 100
P +P
Sbjct: 940 PPGAP 944
Score = 27.7 bits (60), Expect = 9.9
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 46 GRAAQHGIPRPLSSAGRLSQGCRGASTV-GAAGWKGELPKAGGSPAPGPETP---AISPS 101
G ++G P P+ G + G RG + GAAG +G G PGP P A P
Sbjct: 288 GLPGENGAPGPMGPRG--APGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 102 KRARPAEVG 110
EVG
Sbjct: 346 SPGAKGEVG 354
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 37.4 bits (85), Expect = 0.013
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 43 PPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPS 101
PP HG P+P A + GA G AGW+G G P P P P + PS
Sbjct: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAG--GWAGWRGPREVVGREPPPVPPPPPLPPS 113
>gi|19923312 v-myc myelocytomatosis viral related oncogene,
neuroblastoma derived [Homo sapiens]
Length = 464
Score = 37.0 bits (84), Expect = 0.016
Identities = 49/166 (29%), Positives = 60/166 (36%), Gaps = 44/166 (26%)
Query: 18 LLRSAMQNARGARQRAEAAVLS----GPGPPL-GRAAQHGIPRPLSSAGRLSQGCRGAST 72
+L+ M + AR++ E AV G GPP G AQ S AGR G GA
Sbjct: 111 ILQDCMWSGFSAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGR 170
Query: 73 VGAAGWKGELPKAGGSPAPGPETPAI---SPSKRARPAEVGGMQLRFARLSEHATAPTRG 129
GAA LP PA PA+ P + PA V + A+AP G
Sbjct: 171 AGAA-----LPAELAHPAAECVDPAVVFPFPVNKREPAPVP---------AAPASAPAAG 216
Query: 130 SARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSG 175
A A+G IA P+G G PR G
Sbjct: 217 PAVASG----------------------AGIAAPAGAPGVAPPRPG 240
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 37.0 bits (84), Expect = 0.016
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAIS 99
GP P G HG+P P + G + G AG KGE + G PGP P
Sbjct: 535 GPHGPPGPMGPHGLPGPKGTDGPMGPH-------GPAGPKGERGEKGAMGEPGPRGPYGL 587
Query: 100 PSKRARP 106
P K P
Sbjct: 588 PGKDGEP 594
Score = 28.5 bits (62), Expect = 5.8
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQ----------------GCRGASTVGAAGWKGELPK 84
PG P G Q+GIP P G + G G+S G G GE +
Sbjct: 263 PGLP-GAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR 321
Query: 85 AGGSPAPG-PETPAISPSKRARPAEVG 110
G PG P P + P + P +G
Sbjct: 322 PGQKGEPGLPGLPGL-PGIKGEPGFIG 347
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 42 GPP-LGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETP 96
GPP G + G P P G + T G G KG+ + G S A GP P
Sbjct: 368 GPPGRGERGEPGAPGPKGKQGE-------SGTRGPKGSKGDRGEKGDSGAQGPRGP 416
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 37.0 bits (84), Expect = 0.016
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAIS 99
GP P G HG+P P + G + G AG KGE + G PGP P
Sbjct: 535 GPHGPPGPMGPHGLPGPKGTDGPMGPH-------GPAGPKGERGEKGAMGEPGPRGPYGL 587
Query: 100 PSKRARP 106
P K P
Sbjct: 588 PGKDGEP 594
Score = 28.5 bits (62), Expect = 5.8
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQ----------------GCRGASTVGAAGWKGELPK 84
PG P G Q+GIP P G + G G+S G G GE +
Sbjct: 263 PGLP-GAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGR 321
Query: 85 AGGSPAPG-PETPAISPSKRARPAEVG 110
G PG P P + P + P +G
Sbjct: 322 PGQKGEPGLPGLPGL-PGIKGEPGFIG 347
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 42 GPP-LGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETP 96
GPP G + G P P G + T G G KG+ + G S A GP P
Sbjct: 368 GPPGRGERGEPGAPGPKGKQGE-------SGTRGPKGSKGDRGEKGDSGAQGPRGP 416
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 36.6 bits (83), Expect = 0.021
Identities = 33/89 (37%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 26 ARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRG-ASTVGAAGWKGELPK 84
A G AA L G G GIP P+ +AG + G RG G AG KGE
Sbjct: 302 ANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG--ATGARGLVGEPGPAGSKGESGN 359
Query: 85 AG--GSPAP-GPETPAISPSKRARPAEVG 110
G GS P GP P+ KR E G
Sbjct: 360 KGEPGSAGPQGPPGPSGEEGKRGPNGEAG 388
Score = 33.1 bits (74), Expect = 0.24
Identities = 30/79 (37%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 40 GPGPPLGRAAQHGIPRP---LSSAGRL----SQGCRGASTV-GAAGWKGELPKAGGSPAP 91
GP G A G P P L + G L S+G RG V GA G G L AG A
Sbjct: 847 GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGAR 906
Query: 92 GPETPAISPSKRARPAEVG 110
GP SP P E G
Sbjct: 907 GPPGAVGSPGVNGAPGEAG 925
Score = 32.3 bits (72), Expect = 0.40
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 20 RSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWK 79
R+ + G+R + A + GP GR + G+ P G +G AG +
Sbjct: 413 RAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPG-------SPGNIGPAGKE 465
Query: 80 GELPKAGGSPAPGPETPAISPSKRARPAEVG 110
G + G PGP PA R P +G
Sbjct: 466 GPVGLPGIDGRPGPIGPA---GARGEPGNIG 493
Score = 31.6 bits (70), Expect = 0.69
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 27 RGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGAST--VGAAGWKGELPK 84
RGA+ + GP P+G A G P AG G T GAAG G
Sbjct: 741 RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800
Query: 85 AGGSPAPGPETPA 97
+G S PGP PA
Sbjct: 801 SGISGPPGPPGPA 813
Score = 30.8 bits (68), Expect = 1.2
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 27 RGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGA-STVGAAGWKGELPKA 85
RG R + +GP P+G G P P + G G GA T G +G G +
Sbjct: 588 RGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKG--EPGVVGAVGTAGPSGPSGLPGER 645
Query: 86 GGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPT-----RGSARAAG 135
G + PG + P R G R A + A P RG A AAG
Sbjct: 646 GAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAG 700
Score = 30.4 bits (67), Expect = 1.5
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 46 GRAAQHGIPRPLSSAGRLSQGCRGA----STVGAAGWKGELPKAGGSPAPGPETPAISPS 101
G + G+ + + GR G RGA G AG G+ +AG + GP P SP
Sbjct: 655 GEKGEPGLRGEIGNPGR--DGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPG 712
Query: 102 KRARPAEVG 110
+R G
Sbjct: 713 ERGEVGPAG 721
Score = 30.0 bits (66), Expect = 2.0
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGG 87
GA A L G P G + G SAG QG G S G G +G +AG
Sbjct: 334 GAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG--PQGPPGPS--GEEGKRGPNGEAGS 389
Query: 88 SPAPGPETPAISPSKRARPAEVG 110
+ PGP SP R P G
Sbjct: 390 AGPPGPPGLRGSPGSRGLPGADG 412
Score = 30.0 bits (66), Expect = 2.0
Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQ-GCRGA----STVGAAGWKGELPKAGGSPAPGPET 95
PGPP G+P P AG + + G RG G AG +GE G S A GP
Sbjct: 549 PGPP----GFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTG 604
Query: 96 PAISPSKRARPAEVG 110
P S P G
Sbjct: 605 PIGSRGPSGPPGPDG 619
Score = 29.6 bits (65), Expect = 2.6
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 26 ARGARQRAEAAVLSGPGPPLGR---------AAQHGIPRPLSSAGRL-SQGCRGA----S 71
A G R A AA +GP P G A +G P +AG+ ++G RGA
Sbjct: 689 ATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKG 748
Query: 72 TVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVG 110
G G G + AG + GP PA S P G
Sbjct: 749 ENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTG 787
Score = 29.3 bits (64), Expect = 3.4
Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGG 87
GAR A G G A + G P GR Q G G+ G + G
Sbjct: 904 GARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQ----PGHKGERGYPGNIGPVGA 959
Query: 88 SPAPGPETPAISPSKRARPAEVG 110
+ APGP P K E G
Sbjct: 960 AGAPGPHGPVGPAGKHGNRGETG 982
Score = 28.9 bits (63), Expect = 4.5
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQ-GCRGAS-TVGAAGWKGELPKAGGSPAPGPET 95
L GP P G + G P +AG G RG S G G KGE G GP
Sbjct: 581 LPGPAGPRG---ERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSG 637
Query: 96 PAISPSKRARPAEVGG 111
P+ P +R GG
Sbjct: 638 PSGLPGERGAAGIPGG 653
Score = 28.9 bits (63), Expect = 4.5
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQ-GCRGA----STVGAAGWKGELPKAGGSPAPG 92
+SGP P G A + G+ P G + + G GA G G GE AG PG
Sbjct: 803 ISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPG 862
Query: 93 PETPAISPSKRARPAEVG 110
P+ +P P G
Sbjct: 863 PQGLLGAPGILGLPGSRG 880
Score = 28.1 bits (61), Expect = 7.6
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRG-ASTVGAAGWKGELPKAGGSPAPGPETPAI 98
GPGP +G G P + G QG +G A G G G G + PG
Sbjct: 89 GPGP-MGLMGPRGPPGAAGAPG--PQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDG 145
Query: 99 SPSKRARPAEVG 110
P K RP E G
Sbjct: 146 HPGKPGRPGERG 157
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAIS 99
GP P G A G P GR TVG AG +G G + PGP P
Sbjct: 1048 GPAGPRGPAGPSG---PAGKDGRTGH----PGTVGPAGIRGPQGHQGPAGPPGPPGPPGP 1100
Query: 100 P 100
P
Sbjct: 1101 P 1101
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 36.2 bits (82), Expect = 0.028
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 34 EAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGEL---PKAGGSPA 90
E GP PP G G P P AG+ G + AAG P G P
Sbjct: 8 EGGAGDGPLPPGGAGPGPG-PGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPG 66
Query: 91 PGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRG 129
PGP S S+R P E G Q + + A+A T G
Sbjct: 67 PGPGPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTPG 105
Score = 28.1 bits (61), Expect = 7.6
Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 29/137 (21%)
Query: 26 ARGARQRAEAAVLSGPGPP-LGRAAQHGIPRPLSSA----GRLSQGCRGASTVGAAGWKG 80
AR Q + A + G P +A++ P SSA +G R A + AA
Sbjct: 3679 ARPHSQPSSAPAMPKKGQPGYPSSAEYSQPSRASSAYHHASDSKKGSRQAHSGPAALQSK 3738
Query: 81 ELPKA-----GGSPAPGPETPAISPSKRARPAEVGGMQ------------------LRFA 117
P+A G APGP+ SPS R P+ Q L A
Sbjct: 3739 AEPQAQPQLQGRQAAPGPQQSQ-SPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQA 3797
Query: 118 RLSEHATAPTRGSARAA 134
RL + + TRGSA AA
Sbjct: 3798 RLQQQSQPTTRGSAPAA 3814
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.8 bits (81), Expect = 0.037
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLS-QGCRGAS-TVGAAGWKGELPKA 85
GA + A + GP P G G P P G QG G +G G KG K
Sbjct: 673 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP 732
Query: 86 GGSPAPGPETPAISPSKRARPAEVGGM 112
G + PG + P P K + E G +
Sbjct: 733 GLAGLPGADGPPGHPGKEGQSGEKGAL 759
Score = 35.4 bits (80), Expect = 0.048
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 47 RAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARP 106
R A G P P+ GR G + GA G G+ G GP P P KR RP
Sbjct: 536 RIALRGPPGPMGLTGRPGP-VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 594
Query: 107 AEVGG 111
GG
Sbjct: 595 GADGG 599
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRG-ASTVGAAGWKGELPKAGGSPAPGPETP 96
+ GP PLG G+P P QG +G + G AG KG+ G +PGP
Sbjct: 1502 IPGPAGPLGPPGPPGLPGP--------QGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGE 1553
Query: 97 AISP-----SKRARPAEVGGMQ 113
I P SK+ R GMQ
Sbjct: 1554 VIQPLPILSSKKTR-RHTEGMQ 1574
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLS----QGCRGAS-TVGAAGWKGE--LPKAGGSPA--- 90
PGPP G + G+P G QG G G G+ GE LP A G+P
Sbjct: 999 PGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1057
Query: 91 ----PGPETPAISPSKRARPAEVGGMQL 114
GP P SP +R G + L
Sbjct: 1058 GEGPQGPPGPVGSPGERGSAGTAGPIGL 1085
Score = 30.0 bits (66), Expect = 2.0
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 41 PGPPLGRAAQHGIPRPLSSAG----RLSQGCRGAS----------TVGAAGWKGELPKAG 86
PGPP G ++G P+ G R QG GA +VG G KGE +AG
Sbjct: 1215 PGPP-GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAG 1273
Query: 87 GSPAPGPETPAISPSKRARPAEVG 110
PG +R E G
Sbjct: 1274 NPGPPGEAGVGGPKGERGEKGEAG 1297
Score = 29.6 bits (65), Expect = 2.6
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 40 GPGPPLGRAAQHG---IPRPLSSAGRLS-QGCRG-ASTVGAAGWKGELPKAGGSPA---- 90
GP P+G + G P+ GR QG G A GA G KG AG
Sbjct: 1063 GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV 1122
Query: 91 --PGPETPAISPSKRARPAEVG 110
PGP PA SP + E+G
Sbjct: 1123 GLPGPAGPAGSPGEDGDKGEIG 1144
Score = 29.6 bits (65), Expect = 2.6
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISP 100
PGPP G + + G P P G G GA G G KG +AG PG P
Sbjct: 1356 PGPP-GPSGEAGPPGPPGKRG--PPGAAGAE--GRQGEKGAKGEAGAEGPPGKTGPVGPQ 1410
Query: 101 SKRARPAEVG 110
+P G
Sbjct: 1411 GPAGKPGPEG 1420
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.8 bits (81), Expect = 0.037
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLS-QGCRGAS-TVGAAGWKGELPKA 85
GA + A + GP P G G P P G QG G +G G KG K
Sbjct: 622 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP 681
Query: 86 GGSPAPGPETPAISPSKRARPAEVGGM 112
G + PG + P P K + E G +
Sbjct: 682 GLAGLPGADGPPGHPGKEGQSGEKGAL 708
Score = 35.4 bits (80), Expect = 0.048
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 47 RAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARP 106
R A G P P+ GR G + GA G G+ G GP P P KR RP
Sbjct: 485 RIALRGPPGPMGLTGRPGP-VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 543
Query: 107 AEVGG 111
GG
Sbjct: 544 GADGG 548
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRG-ASTVGAAGWKGELPKAGGSPAPGPETP 96
+ GP PLG G+P P QG +G + G AG KG+ G +PGP
Sbjct: 1451 IPGPAGPLGPPGPPGLPGP--------QGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGE 1502
Query: 97 AISP-----SKRARPAEVGGMQ 113
I P SK+ R GMQ
Sbjct: 1503 VIQPLPILSSKKTR-RHTEGMQ 1523
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLS----QGCRGAS-TVGAAGWKGE--LPKAGGSPA--- 90
PGPP G + G+P G QG G G G+ GE LP A G+P
Sbjct: 948 PGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1006
Query: 91 ----PGPETPAISPSKRARPAEVGGMQL 114
GP P SP +R G + L
Sbjct: 1007 GEGPQGPPGPVGSPGERGSAGTAGPIGL 1034
Score = 30.0 bits (66), Expect = 2.0
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 41 PGPPLGRAAQHGIPRPLSSAG----RLSQGCRGAS----------TVGAAGWKGELPKAG 86
PGPP G ++G P+ G R QG GA +VG G KGE +AG
Sbjct: 1164 PGPP-GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAG 1222
Query: 87 GSPAPGPETPAISPSKRARPAEVG 110
PG +R E G
Sbjct: 1223 NPGPPGEAGVGGPKGERGEKGEAG 1246
Score = 29.6 bits (65), Expect = 2.6
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 40 GPGPPLGRAAQHG---IPRPLSSAGRLS-QGCRG-ASTVGAAGWKGELPKAGGSPA---- 90
GP P+G + G P+ GR QG G A GA G KG AG
Sbjct: 1012 GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV 1071
Query: 91 --PGPETPAISPSKRARPAEVG 110
PGP PA SP + E+G
Sbjct: 1072 GLPGPAGPAGSPGEDGDKGEIG 1093
Score = 29.6 bits (65), Expect = 2.6
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISP 100
PGPP G + + G P P G G GA G G KG +AG PG P
Sbjct: 1305 PGPP-GPSGEAGPPGPPGKRG--PPGAAGAE--GRQGEKGAKGEAGAEGPPGKTGPVGPQ 1359
Query: 101 SKRARPAEVG 110
+P G
Sbjct: 1360 GPAGKPGPEG 1369
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.8 bits (81), Expect = 0.037
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLS-QGCRGAS-TVGAAGWKGELPKA 85
GA + A + GP P G G P P G QG G +G G KG K
Sbjct: 661 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP 720
Query: 86 GGSPAPGPETPAISPSKRARPAEVGGM 112
G + PG + P P K + E G +
Sbjct: 721 GLAGLPGADGPPGHPGKEGQSGEKGAL 747
Score = 35.4 bits (80), Expect = 0.048
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 47 RAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARP 106
R A G P P+ GR G + GA G G+ G GP P P KR RP
Sbjct: 524 RIALRGPPGPMGLTGRPGP-VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 582
Query: 107 AEVGG 111
GG
Sbjct: 583 GADGG 587
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRG-ASTVGAAGWKGELPKAGGSPAPGPETP 96
+ GP PLG G+P P QG +G + G AG KG+ G +PGP
Sbjct: 1490 IPGPAGPLGPPGPPGLPGP--------QGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGE 1541
Query: 97 AISP-----SKRARPAEVGGMQ 113
I P SK+ R GMQ
Sbjct: 1542 VIQPLPILSSKKTR-RHTEGMQ 1562
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLS----QGCRGAS-TVGAAGWKGE--LPKAGGSPA--- 90
PGPP G + G+P G QG G G G+ GE LP A G+P
Sbjct: 987 PGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG 1045
Query: 91 ----PGPETPAISPSKRARPAEVGGMQL 114
GP P SP +R G + L
Sbjct: 1046 GEGPQGPPGPVGSPGERGSAGTAGPIGL 1073
Score = 30.0 bits (66), Expect = 2.0
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 41 PGPPLGRAAQHGIPRPLSSAG----RLSQGCRGAS----------TVGAAGWKGELPKAG 86
PGPP G ++G P+ G R QG GA +VG G KGE +AG
Sbjct: 1203 PGPP-GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAG 1261
Query: 87 GSPAPGPETPAISPSKRARPAEVG 110
PG +R E G
Sbjct: 1262 NPGPPGEAGVGGPKGERGEKGEAG 1285
Score = 29.6 bits (65), Expect = 2.6
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 40 GPGPPLGRAAQHG---IPRPLSSAGRLS-QGCRG-ASTVGAAGWKGELPKAGGSPA---- 90
GP P+G + G P+ GR QG G A GA G KG AG
Sbjct: 1051 GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV 1110
Query: 91 --PGPETPAISPSKRARPAEVG 110
PGP PA SP + E+G
Sbjct: 1111 GLPGPAGPAGSPGEDGDKGEIG 1132
Score = 29.6 bits (65), Expect = 2.6
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISP 100
PGPP G + + G P P G G GA G G KG +AG PG P
Sbjct: 1344 PGPP-GPSGEAGPPGPPGKRG--PPGAAGAE--GRQGEKGAKGEAGAEGPPGKTGPVGPQ 1398
Query: 101 SKRARPAEVG 110
+P G
Sbjct: 1399 GPAGKPGPEG 1408
>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 35.8 bits (81), Expect = 0.037
Identities = 33/89 (37%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 59 SAGRLSQGCRGASTVGAAGWKGELP------KAGGSPAPGPETPAISPSKRARPAEVGGM 112
SAGR G GAAG +G LP AG PA PA P + A A V G
Sbjct: 101 SAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGT 160
Query: 113 QLRFARLSEHATAPT------RGSARAAG 135
Q + A PT RGSA A+G
Sbjct: 161 QRGGCARAAEAPQPTGGRGCSRGSATASG 189
>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 35.8 bits (81), Expect = 0.037
Identities = 33/89 (37%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 59 SAGRLSQGCRGASTVGAAGWKGELP------KAGGSPAPGPETPAISPSKRARPAEVGGM 112
SAGR G GAAG +G LP AG PA PA P + A A V G
Sbjct: 101 SAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGT 160
Query: 113 QLRFARLSEHATAPT------RGSARAAG 135
Q + A PT RGSA A+G
Sbjct: 161 QRGGCARAAEAPQPTGGRGCSRGSATASG 189
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.8 bits (81), Expect = 0.037
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 33/141 (23%)
Query: 20 RSAMQNARGARQRAEAAVLSGPGP--PLGRAAQHGIPRPLSSAG-RLSQGCRGASTVGAA 76
R++ A G +RA A + PGP GRA+ P PL G R+S A A
Sbjct: 81 RTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRIS-----AEETVAR 135
Query: 77 GWKGELPKAG----------GSPAPGPETPAISPSKRARPAEVG---------------G 111
G E PK P PG +PA++ RA EVG G
Sbjct: 136 GKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG 195
Query: 112 MQLRFARLSEHATAPTRGSAR 132
+ + SEH+T +AR
Sbjct: 196 PRKSVSSASEHSTTEPSPAAR 216
Score = 32.7 bits (73), Expect = 0.31
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 21/119 (17%)
Query: 20 RSAMQNARGARQRAEAAVLSGPGPPLGRAAQH-----GIPRPLSSAGRLSQGCRGASTVG 74
RSA+ + GAR+ P P + R ++ G+PRP SA R G
Sbjct: 144 RSAL--SAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSA-RPRPPTEG----- 195
Query: 75 AAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARA 133
P+ S A T SP+ R RP+ GG+Q +R + P AR+
Sbjct: 196 --------PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS 246
>gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 35.8 bits (81), Expect = 0.037
Identities = 33/89 (37%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 59 SAGRLSQGCRGASTVGAAGWKGELP------KAGGSPAPGPETPAISPSKRARPAEVGGM 112
SAGR G GAAG +G LP AG PA PA P + A A V G
Sbjct: 101 SAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGT 160
Query: 113 QLRFARLSEHATAPT------RGSARAAG 135
Q + A PT RGSA A+G
Sbjct: 161 QRGGCARAAEAPQPTGGRGCSRGSATASG 189
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.4 bits (80), Expect = 0.048
Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGG 87
GA+ A A + G G ++G P P+ G + R GAAG +G + G
Sbjct: 297 GAKGEAGAPGVKGES---GSPGENGSPGPMGPRGLPGERGR-TGPAGAAGARGNDGQPGP 352
Query: 88 SPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAP-----TRGSARAAG 135
+ PGP PA P P G AR E A P T GS AG
Sbjct: 353 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG 405
Score = 33.5 bits (75), Expect = 0.18
Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 41 PGPP-----------LGRAAQHGIPRPLSSAG-------------RLSQGCRGAS-TVGA 75
PGPP G+A + G P P + G R G GA GA
Sbjct: 245 PGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGA 304
Query: 76 AGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLR 115
G KGE G + +PGP P P +R R G R
Sbjct: 305 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 344
Score = 33.5 bits (75), Expect = 0.18
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQ----GCRGAS-TVGAAGWKGELPKAGGSPAPGPE 94
GP P G A G P G G GA GA G +GE + G + APGP+
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 866
Query: 95 TPAISPSKRARPAEVGGMQLRFARLSEHAT 124
P+ +P + G R A+ AT
Sbjct: 867 GPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Score = 33.1 bits (74), Expect = 0.24
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAIS 99
GP P G+ +GIP P+ G RG S G G G G PGP P I
Sbjct: 1167 GPVGPSGKDGANGIPGPIGPPGP-----RGRS--GETGPAGPPGNPGPPGPPGPPGPGID 1219
Query: 100 PSKRA--RPAEVGGMQLRFARLSEHA 123
S A P E G L++ R + A
Sbjct: 1220 MSAFAGLGPREKGPDPLQYMRADQAA 1245
Score = 32.0 bits (71), Expect = 0.53
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 32 RAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAP 91
R E + PG P G P P G+ QG RG + GA G G AG
Sbjct: 1058 RGETGAVGAPGAP----GPPGSPGPAGPTGK--QGDRGEA--GAQGPMGPSGPAGARGIQ 1109
Query: 92 GPETPAISPSKRARPAEVG 110
GP+ P + P E G
Sbjct: 1110 GPQGPRGDKGEAGEPGERG 1128
Score = 31.6 bits (70), Expect = 0.69
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 20 RSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLS-QGCRGASTVGAAGW 78
R+ A GAR +GP P+G A G P + G G RG GA G
Sbjct: 334 RTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE--GAQGP 391
Query: 79 KGELPKAGGSPAP 91
+GE P GSP P
Sbjct: 392 RGE-PGTPGSPGP 403
Score = 31.2 bits (69), Expect = 0.90
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 28 GARQRAEAAVLSG----PGPPLGRAAQHGIPRPLSSAGRLSQ-GCRGASTVGAAGWKGEL 82
GA+ A A ++G PGP G G PL G+ + G G G G KGE
Sbjct: 417 GAKGSAGAPGIAGAPGFPGPR-GPPGPQGATGPLGPKGQTGEPGIAGFK--GEQGPKGEP 473
Query: 83 PKAGGSPAPGPETPAISPSKRARPAEVG 110
AG APGP R P VG
Sbjct: 474 GPAGPQGAPGPAGEEGKRGARGEPGGVG 501
Score = 31.2 bits (69), Expect = 0.90
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 39 SGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTV----GAAGWKGELPKAGGSPAPGPE 94
SG P G G+ P GR +G GA GAAG KG+ + G APG
Sbjct: 1013 SGDRGPPGPVGPPGLTGPAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP 1070
Query: 95 TPAISP 100
P SP
Sbjct: 1071 GPPGSP 1076
Score = 28.5 bits (62), Expect = 5.8
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 22 AMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGE 81
A Q A G ++A A L P+G G P P + G G G GE
Sbjct: 180 AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPG----------PQGFQGNPGE 229
Query: 82 LPKAGGSPAPGPETPAISPSKRARPAEVG 110
+ G S GP P P K E G
Sbjct: 230 PGEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Score = 28.5 bits (62), Expect = 5.8
Identities = 34/115 (29%), Positives = 40/115 (34%), Gaps = 26/115 (22%)
Query: 24 QNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAG-------------RLSQGCRGA 70
+ A+G R GP G GIP SAG R G +GA
Sbjct: 386 EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA 445
Query: 71 S----------TVGAAGWKGEL-PKAGGSPA--PGPETPAISPSKRARPAEVGGM 112
+ G AG+KGE PK PA G PA KR E GG+
Sbjct: 446 TGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 500
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.4 bits (80), Expect = 0.048
Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGG 87
GA+ A A + G G ++G P P+ G + R GAAG +G + G
Sbjct: 228 GAKGEAGAPGVKGES---GSPGENGSPGPMGPRGLPGERGR-TGPAGAAGARGNDGQPGP 283
Query: 88 SPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAP-----TRGSARAAG 135
+ PGP PA P P G AR E A P T GS AG
Sbjct: 284 AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG 336
Score = 33.5 bits (75), Expect = 0.18
Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 41 PGPP-----------LGRAAQHGIPRPLSSAG-------------RLSQGCRGAS-TVGA 75
PGPP G+A + G P P + G R G GA GA
Sbjct: 176 PGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGA 235
Query: 76 AGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLR 115
G KGE G + +PGP P P +R R G R
Sbjct: 236 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 275
Score = 33.5 bits (75), Expect = 0.18
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQ----GCRGAS-TVGAAGWKGELPKAGGSPAPGPE 94
GP P G A G P G G GA GA G +GE + G + APGP+
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 797
Query: 95 TPAISPSKRARPAEVGGMQLRFARLSEHAT 124
P+ +P + G R A+ AT
Sbjct: 798 GPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Score = 33.1 bits (74), Expect = 0.24
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAIS 99
GP P G+ +GIP P+ G RG S G G G G PGP P I
Sbjct: 1098 GPVGPSGKDGANGIPGPIGPPGP-----RGRS--GETGPAGPPGNPGPPGPPGPPGPGID 1150
Query: 100 PSKRA--RPAEVGGMQLRFARLSEHA 123
S A P E G L++ R + A
Sbjct: 1151 MSAFAGLGPREKGPDPLQYMRADQAA 1176
Score = 32.0 bits (71), Expect = 0.53
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 32 RAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAP 91
R E + PG P G P P G+ QG RG + GA G G AG
Sbjct: 989 RGETGAVGAPGAP----GPPGSPGPAGPTGK--QGDRGEA--GAQGPMGPSGPAGARGIQ 1040
Query: 92 GPETPAISPSKRARPAEVG 110
GP+ P + P E G
Sbjct: 1041 GPQGPRGDKGEAGEPGERG 1059
Score = 31.6 bits (70), Expect = 0.69
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 20 RSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLS-QGCRGASTVGAAGW 78
R+ A GAR +GP P+G A G P + G G RG GA G
Sbjct: 265 RTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE--GAQGP 322
Query: 79 KGELPKAGGSPAP 91
+GE P GSP P
Sbjct: 323 RGE-PGTPGSPGP 334
Score = 31.2 bits (69), Expect = 0.90
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 28 GARQRAEAAVLSG----PGPPLGRAAQHGIPRPLSSAGRLSQ-GCRGASTVGAAGWKGEL 82
GA+ A A ++G PGP G G PL G+ + G G G G KGE
Sbjct: 348 GAKGSAGAPGIAGAPGFPGPR-GPPGPQGATGPLGPKGQTGEPGIAGFK--GEQGPKGEP 404
Query: 83 PKAGGSPAPGPETPAISPSKRARPAEVG 110
AG APGP R P VG
Sbjct: 405 GPAGPQGAPGPAGEEGKRGARGEPGGVG 432
Score = 31.2 bits (69), Expect = 0.90
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 39 SGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTV----GAAGWKGELPKAGGSPAPGPE 94
SG P G G+ P GR +G GA GAAG KG+ + G APG
Sbjct: 944 SGDRGPPGPVGPPGLTGPAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAP 1001
Query: 95 TPAISP 100
P SP
Sbjct: 1002 GPPGSP 1007
Score = 28.5 bits (62), Expect = 5.8
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 22 AMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGE 81
A Q A G ++A A L P+G G P P + G G G GE
Sbjct: 111 AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPG----------PQGFQGNPGE 160
Query: 82 LPKAGGSPAPGPETPAISPSKRARPAEVG 110
+ G S GP P P K E G
Sbjct: 161 PGEPGVSGPMGPRGPPGPPGKPGDDGEAG 189
Score = 28.5 bits (62), Expect = 5.8
Identities = 34/115 (29%), Positives = 40/115 (34%), Gaps = 26/115 (22%)
Query: 24 QNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAG-------------RLSQGCRGA 70
+ A+G R GP G GIP SAG R G +GA
Sbjct: 317 EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA 376
Query: 71 S----------TVGAAGWKGEL-PKAGGSPA--PGPETPAISPSKRARPAEVGGM 112
+ G AG+KGE PK PA G PA KR E GG+
Sbjct: 377 TGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 431
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 35.4 bits (80), Expect = 0.048
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGG----------SPA 90
PGPP R A PR S+G + C +S GA +LP+ G +
Sbjct: 129 PGPPSLRRAPINQPRRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGEVNKVKYPSAARG 188
Query: 91 PGPETPAISPSKRARPAEVG--GMQLRFARLSEHATAPTR 128
PG T + A PA G G+ +R H P R
Sbjct: 189 PGRSTLGVGCEPAASPAAGGWAGVTSSDSRAVPHTLLPQR 228
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 35.4 bits (80), Expect = 0.048
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 41 PGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGG----------SPA 90
PGPP R A PR S+G + C +S GA +LP+ G +
Sbjct: 129 PGPPSLRRAPINQPRRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGEVNKVKYPSAARG 188
Query: 91 PGPETPAISPSKRARPAEVG--GMQLRFARLSEHATAPTR 128
PG T + A PA G G+ +R H P R
Sbjct: 189 PGRSTLGVGCEPAASPAAGGWAGVTSSDSRAVPHTLLPQR 228
>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
Length = 566
Score = 35.4 bits (80), Expect = 0.048
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 34 EAAVLSGPG-----PPLGRAAQHGIPRPLSSAGRLSQG--CRGAS-TVGAAGWKGELPKA 85
EA S PG PP G+ + A R G CR A + G G +G +A
Sbjct: 40 EAPSASLPGAERATPPTREEPGKGLT---AEAAREQSGSPCRAAGVSPGTGGREGAEWRA 96
Query: 86 GGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYT 145
GG PG SPS PA+ G +LR A L ++P + G +A+ +
Sbjct: 97 GGREGPG-----PSPSPSPSPAKPAGAELRRAFLERCLSSPVSAESFPGGAAAVAAFSCS 151
Query: 146 IPP 148
+ P
Sbjct: 152 VAP 154
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.7 bits (78), Expect = 0.081
Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 33/135 (24%)
Query: 26 ARGARQRAEAAVLSGPGP--PLGRAAQHGIPRPLSSAG-RLSQGCRGASTVGAAGWKGEL 82
A G +RA A + PGP GRA+ P PL G R+S A A G E
Sbjct: 96 ASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRIS-----AEETVARGKATEA 150
Query: 83 PKAG----------GSPAPGPETPAISPSKRARPAEVG---------------GMQLRFA 117
PK P PG +PA++ RA EVG G + +
Sbjct: 151 PKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS 210
Query: 118 RLSEHATAPTRGSAR 132
SEH+T +AR
Sbjct: 211 SASEHSTTEPSPAAR 225
Score = 32.7 bits (73), Expect = 0.31
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 21/119 (17%)
Query: 20 RSAMQNARGARQRAEAAVLSGPGPPLGRAAQH-----GIPRPLSSAGRLSQGCRGASTVG 74
RSA+ + GAR+ P P + R ++ G+PRP SA R G
Sbjct: 153 RSAL--SAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSA-RPRPPTEG----- 204
Query: 75 AAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARA 133
P+ S A T SP+ R RP+ GG+Q +R + P AR+
Sbjct: 205 --------PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS 255
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 34.7 bits (78), Expect = 0.081
Identities = 40/134 (29%), Positives = 46/134 (34%), Gaps = 33/134 (24%)
Query: 14 FLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGI-------------PRPL--- 57
FL S L +AR R A + GP P GR G+ P PL
Sbjct: 6 FLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELA 65
Query: 58 -------SSAGRLSQGCRGAS---TVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPA 107
+SA CR A GAA W+G P P P +PA RARP
Sbjct: 66 APSLVPNASASPRPVSCRRAPPRPVPGAARWRGR-------PEPRPGSPAGPAPTRARPL 118
Query: 108 EVGGMQLRFARLSE 121
G AR E
Sbjct: 119 GAPGRSAPPARRRE 132
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 34.7 bits (78), Expect = 0.081
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 17/113 (15%)
Query: 6 PRPALCYHFLTSLLRS-AMQNARGARQRAEAAVLSG----------PGPPLGRAAQHGIP 54
P PAL L + + A + R+R AA LS PGP G P
Sbjct: 36 PGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASP 95
Query: 55 RPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPA 107
P + R GA V AA G LP SP P P +P + ++ + PA
Sbjct: 96 LPPALQPR------GAPAVPAAPSPGPLPARPSSPPPSPPSPPVPTAQSSLPA 142
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 34.7 bits (78), Expect = 0.081
Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 33/135 (24%)
Query: 26 ARGARQRAEAAVLSGPGP--PLGRAAQHGIPRPLSSAG-RLSQGCRGASTVGAAGWKGEL 82
A G +RA A + PGP GRA+ P PL G R+S A A G E
Sbjct: 96 ASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRIS-----AEETVARGKATEA 150
Query: 83 PKAG----------GSPAPGPETPAISPSKRARPAEVG---------------GMQLRFA 117
PK P PG +PA++ RA EVG G + +
Sbjct: 151 PKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS 210
Query: 118 RLSEHATAPTRGSAR 132
SEH+T +AR
Sbjct: 211 SASEHSTTEPSPAAR 225
Score = 32.7 bits (73), Expect = 0.31
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 21/119 (17%)
Query: 20 RSAMQNARGARQRAEAAVLSGPGPPLGRAAQH-----GIPRPLSSAGRLSQGCRGASTVG 74
RSA+ + GAR+ P P + R ++ G+PRP SA R G
Sbjct: 153 RSAL--SAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSA-RPRPPTEG----- 204
Query: 75 AAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARA 133
P+ S A T SP+ R RP+ GG+Q +R + P AR+
Sbjct: 205 --------PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS 255
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 34.7 bits (78), Expect = 0.081
Identities = 40/134 (29%), Positives = 46/134 (34%), Gaps = 33/134 (24%)
Query: 14 FLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGI-------------PRPL--- 57
FL S L +AR R A + GP P GR G+ P PL
Sbjct: 6 FLMSSLARLRVSARTVRPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELA 65
Query: 58 -------SSAGRLSQGCRGAS---TVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPA 107
+SA CR A GAA W+G P P P +PA RARP
Sbjct: 66 APSLVPNASASPRPVSCRRAPPRPVPGAARWRGR-------PEPRPGSPAGPAPTRARPL 118
Query: 108 EVGGMQLRFARLSE 121
G AR E
Sbjct: 119 GAPGRSAPPARRRE 132
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 34.7 bits (78), Expect = 0.081
Identities = 29/72 (40%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 40 GPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSP-APGPETPAI 98
GP +G G P PL AG +G RG G AG +G LP G P A GPE P
Sbjct: 1471 GPPGAIGPKGDRGFPGPLGEAG--EKGERGPP--GPAGSRG-LPGVAGRPGAKGPEGP-- 1523
Query: 99 SPSKRARPAEVG 110
P R E G
Sbjct: 1524 -PGPTGRQGEKG 1534
Score = 31.2 bits (69), Expect = 0.90
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 33 AEAAVLSGPGPPL-GRAAQHGIPRPLSSAGRLSQ-GCRGASTVGAAGWKGELPKAGGSPA 90
A V+ G GP L GR G P G L G RG + KG+ G
Sbjct: 1351 APGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGP 1410
Query: 91 PGPETPAISPSKRARPAEVG 110
PGP I+P + P G
Sbjct: 1411 PGPGEGGIAPGEPGLPGLPG 1430
Score = 28.1 bits (61), Expect = 7.6
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 28 GARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSAGRLSQ-GCRGASTVGAAGWKGELPKAG 86
GA R A+ G G G+P P+ G G G + VG G KGE G
Sbjct: 2257 GAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPG 2316
Query: 87 GSPA-----PGPETPAISPSKRARPAEVG 110
G PG + P R E G
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAG 2345
Score = 27.7 bits (60), Expect = 9.9
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 38 LSGPGPPLGRAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETP 96
L GP P G HG P P + G A G +G KGE P G P G P
Sbjct: 2169 LQGPRGPPGPVGGHGDPGPPGAPGLAGP----AGPQGPSGLKGE-PGETGPPGRGLTGP 2222
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,354,060
Number of Sequences: 37866
Number of extensions: 599711
Number of successful extensions: 4155
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 310
Number of HSP's that attempted gapping in prelim test: 3373
Number of HSP's gapped (non-prelim): 999
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.