Guide to the Human Genome
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Name: LOC100288243 Sequence: fasta or formatted (262aa) NCBI GI: 239741546
Description:

PREDICTED: hypothetical protein XP_002342233

Not currently referenced in the text

Other entries for this name:
alt prot {76aa} PREDICTED: hypothetical protein
alt mRNA {262aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         35           2
 C cysteine            4.2         11           1
 D aspartate           1.1          3           1
 E glutamate           3.8         10           1
 F phenylalanine       2.3          6           1
 G glycine             9.5         25           2
 H histidine           2.3          6           1
 I isoleucine          0.8          2           1
 K lysine              1.1          3           1
 L leucine             6.1         16           2
 M methionine          0.8          2           1
 N asparagine          2.3          6           1
 P proline            16.0         42           6
 Q glutamine           2.7          7           1
 R arginine           13.4         35           2
 S serine             12.6         33           2
 T threonine           1.9          5           1
 V valine              3.4          9           1
 W tryptophan          1.5          4           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342233 
LOC100288243          1.000   PREDICTED: hypothetical protein 
TAF4                  0.049   TBP-associated factor 4 
WASL                  0.047   Wiskott-Aldrich syndrome gene-like protein 
HCN2                  0.047   hyperpolarization activated cyclic nucleotide-gated...
PRR12                 0.045   proline rich 12 
LOC100293662          0.043   PREDICTED: hypothetical protein 
FLJ20021              0.043   PREDICTED: hypothetical protein 
FLJ20021              0.043   PREDICTED: hypothetical protein 
FLJ20021              0.043   PREDICTED: hypothetical protein 
ATXN2                 0.043   ataxin 2 
LOC100289444          0.043   PREDICTED: hypothetical protein 
LOC100289444          0.043   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.043   PREDICTED: hypothetical protein 
SFPQ                  0.043   splicing factor proline/glutamine rich (polypyrimidin...
HOXB4                 0.042   homeobox B4 
LOC100131102          0.042   PREDICTED: hypothetical protein 
LOC100131102          0.042   PREDICTED: hypothetical protein 
RFX1                  0.042   regulatory factor X1 
C17orf96              0.042   hypothetical protein LOC100170841 
WAS                   0.040   Wiskott-Aldrich syndrome protein 
LOC100132234          0.040   PREDICTED: hypothetical protein LOC100132234 
LOC100292865          0.040   PREDICTED: hypothetical protein 
LOC100132234          0.040   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.040   PREDICTED: hypothetical protein LOC100132234 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
EP400                 0.040   E1A binding protein p400 
WIPF3                 0.040   WAS/WASL interacting protein family, member 3 [Homo...
LOC729370             0.038   PREDICTED: hypothetical protein 
RAPH1                 0.038   Ras association and pleckstrin homology domains 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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