Guide to the Human Genome
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Name: LOC100129036 Sequence: fasta or formatted (249aa) NCBI GI: 169170949
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {249aa} PREDICTED: hypothetical protein
alt mRNA {249aa} PREDICTED: hypothetical protein
alt prot {249aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         33           2
 C cysteine            2.4          6           2
 D aspartate           0.4          1           1
 E glutamate           4.0         10           1
 F phenylalanine       1.2          3           1
 G glycine            14.1         35           2
 H histidine           3.2          8           2
 I isoleucine          1.6          4           1
 K lysine              4.0         10           2
 L leucine             7.2         18           2
 M methionine          0.8          2           1
 N asparagine          2.8          7           2
 P proline            13.3         33           3
 Q glutamine           5.6         14           2
 R arginine           11.6         29           2
 S serine              5.2         13           2
 T threonine           3.6          9           2
 V valine              3.2          8           1
 W tryptophan          1.2          3           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129036          1.000   PREDICTED: hypothetical protein 
LOC100129036          1.000   PREDICTED: hypothetical protein 
LOC100129036          0.880   PREDICTED: hypothetical protein 
PRB4                  0.054   proline-rich protein BstNI subfamily 4 precursor [Ho...
LOC100292589          0.054   PREDICTED: hypothetical protein 
LOC100290121          0.054   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.054   PREDICTED: hypothetical protein XP_002342721 
LOC100127891          0.048   PREDICTED: hypothetical protein 
NACA                  0.046   nascent polypeptide-associated complex alpha subuni...
ZNF687                0.044   zinc finger protein 687 
COL18A1               0.044   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.044   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.044   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
TAF4                  0.042   TBP-associated factor 4 
COL2A1                0.042   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.042   collagen, type II, alpha 1 isoform 2 precursor [Hom...
PRB3                  0.042   proline-rich protein BstNI subfamily 3 precursor [H...
COL3A1                0.040   collagen type III alpha 1 preproprotein 
SYN1                  0.040   synapsin I isoform Ia 
SYN1                  0.040   synapsin I isoform Ib 
COL4A2                0.040   alpha 2 type IV collagen preproprotein 
COL1A1                0.040   alpha 1 type I collagen preproprotein 
PRB2                  0.040   proline-rich protein BstNI subfamily 2 
EMID2                 0.040   EMI domain containing 2 
LOC100291634          0.038   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.038   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.038   PREDICTED: hypothetical protein 
COL13A1               0.038   alpha 1 type XIII collagen isoform 15 
COL13A1               0.038   alpha 1 type XIII collagen isoform 13 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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