Guide to the Human Genome
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Name: FBXO42 Sequence: fasta or formatted (717aa) NCBI GI: 62955044
Description:

F-box protein 42

Referenced in:

Cullins and SCF Complexes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         49           2
 C cysteine            1.8         13           1
 D aspartate           4.5         32           2
 E glutamate           4.9         35           2
 F phenylalanine       2.1         15           2
 G glycine             8.9         64           2
 H histidine           3.1         22           2
 I isoleucine          3.5         25           2
 K lysine              4.0         29           2
 L leucine             8.1         58           2
 M methionine          2.6         19           1
 N asparagine          3.3         24           1
 P proline            10.2         73           3
 Q glutamine           4.3         31           1
 R arginine            5.2         37           2
 S serine             11.7         84           3
 T threonine           3.9         28           2
 V valine              5.9         42           3
 W tryptophan          2.4         17           2
 Y tyrosine            2.8         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   F-box protein 42 
KLHDC1                0.035   kelch domain containing 1 
HCFC1                 0.034   host cell factor 1 
KLHDC2                0.032   kelch domain containing 2 
HCFC2                 0.031   host cell factor C2 
KLHDC3                0.029   kelch domain containing 3 
KLHDC4                0.027   kelch domain containing 4 
LZTR1                 0.026   leucine-zipper-like transcription regulator 1 
MAMSTR                0.022   MEF2 activating motif and SAP domain containing tra...
MEGF8                 0.021   multiple EGF-like-domains 8 
RABEPK                0.020   Rab9 effector protein with kelch motifs 
KLHDC10               0.020   kelch domain containing 10 
MAGEE1                0.017   melanoma antigen family E, 1 
ATRNL1                0.017   attractin-like 1 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
ATRN                  0.016   attractin isoform 2 
ATRN                  0.016   attractin isoform 1 
MYLK3                 0.014   myosin light chain kinase 3 
SRRM2                 0.013   splicing coactivator subunit SRm300 
WDR33                 0.013   WD repeat domain 33 isoform 1 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
TPRX1                 0.012   tetra-peptide repeat homeobox 
C6orf174              0.012   hypothetical protein LOC387104 
ARHGAP17              0.012   nadrin isoform 1 
ARHGAP17              0.012   nadrin isoform 2 
BCL9                  0.012   B-cell CLL/lymphoma 9 
SRRM1                 0.012   serine/arginine repetitive matrix 1 
KLHL33                0.011   kelch-like 33 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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