HCFC1 37742

Name: HCFC1	Sequence: fasta or formatted (2035aa)		NCBI GI: 98986457
Description: host cell factor 1		Referenced in: CREB / ATF Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.5 235 6 C cysteine 1.7 35 2 D aspartate 2.4 49 3 E glutamate 3.9 80 2 F phenylalanine 0.9 19 1 G glycine 8.0 162 3 H histidine 1.7 34 3 I isoleucine 3.8 78 2 K lysine 3.6 73 2 L leucine 6.8 139 2 M methionine 1.9 38 1 N asparagine 2.9 59 2 P proline 9.5 193 4 Q glutamine 5.6 113 4 R arginine 2.8 56 2 S serine 8.9 181 3 T threonine 13.2 268 4 V valine 8.8 180 3 W tryptophan 0.9 18 1 Y tyrosine 1.2 25 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 host cell factor 1 HCFC2 0.142 host cell factor C2 MUC2 0.048 mucin 2 precursor MUC17 0.041 mucin 17 MUC5B 0.035 mucin 5, subtype B, tracheobronchial LOC729792 0.034 PREDICTED: hypothetical protein LOC100294238 0.034 PREDICTED: hypothetical protein LOC100294204 0.034 PREDICTED: hypothetical protein LOC729792 0.034 PREDICTED: hypothetical protein LOC100294501 0.034 PREDICTED: hypothetical protein LOC100294249 0.034 PREDICTED: hypothetical protein XP_002344067 LOC730401 0.034 PREDICTED: hypothetical protein LOC729792 0.034 PREDICTED: hypothetical protein LOC100294136 0.034 PREDICTED: hypothetical protein LOC100294091 0.034 PREDICTED: hypothetical protein MUC5AC 0.031 mucin 5AC MUC4 0.029 mucin 4 isoform a MUC16 0.028 mucin 16 MUC6 0.027 mucin 6, gastric MUC12 0.026 PREDICTED: mucin 12 LOC100131514 0.025 PREDICTED: similar to hCG1747327, partial MUC12 0.024 PREDICTED: mucin 12, cell surface associated NACA 0.023 nascent polypeptide-associated complex alpha subuni... MUC3A 0.023 PREDICTED: mucin 3A, intestinal KLHDC3 0.022 kelch domain containing 3 MUC12 0.022 PREDICTED: mucin 12 LOC100294420 0.020 PREDICTED: similar to mucin 2 RGAG1 0.019 retrotransposon gag domain containing 1 RABEPK 0.018 Rab9 effector protein with kelch motifs KLHDC2 0.016 kelch domain containing 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.