Guide to the Human Genome
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Name: ATRNL1 Sequence: fasta or formatted (1379aa) NCBI GI: 46410931
Description:

attractin-like 1

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         81           2
 C cysteine            6.2         86           1
 D aspartate           4.1         56           2
 E glutamate           4.4         61           2
 F phenylalanine       3.5         48           2
 G glycine             8.3        114           6
 H histidine           2.5         35           2
 I isoleucine          5.0         69           3
 K lysine              4.9         67           2
 L leucine             7.2         99           3
 M methionine          1.5         20           1
 N asparagine          7.0         97           3
 P proline             4.7         65           3
 Q glutamine           4.1         56           2
 R arginine            3.7         51           3
 S serine              9.1        126           2
 T threonine           5.9         81           2
 V valine              5.2         72           2
 W tryptophan          2.4         33           1
 Y tyrosine            4.5         62           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   attractin-like 1 
ATRN                  0.596   attractin isoform 1 
ATRN                  0.520   attractin isoform 2 
MEGF8                 0.067   multiple EGF-like-domains 8 
KLHDC3                0.019   kelch domain containing 3 
LAMA1                 0.017   laminin, alpha 1 precursor 
PAMR1                 0.016   regeneration associated muscle protease isoform b [H...
USH2A                 0.016   usherin isoform B 
USH2A                 0.016   usherin isoform A 
TLL1                  0.015   tolloid-like 1 
LAMA3                 0.015   laminin alpha 3 subunit isoform 1 
LAMA3                 0.015   laminin alpha 3 subunit isoform 4 
LAMA3                 0.015   laminin alpha 3 subunit isoform 3 
LAMA3                 0.015   laminin alpha 3 subunit isoform 2 
LAMB1                 0.015   laminin, beta 1 precursor 
CSMD2                 0.015   CUB and Sushi multiple domains 2 
LAMA5                 0.014   laminin alpha 5 
HSPG2                 0.014   heparan sulfate proteoglycan 2 
LAMB2                 0.014   laminin, beta 2 precursor 
LAMC3                 0.014   laminin, gamma 3 precursor 
PAMR1                 0.013   regeneration associated muscle protease isoform a [H...
LAMA2                 0.013   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.013   laminin alpha 2 subunit isoform a precursor 
HCFC1                 0.013   host cell factor 1 
LAMC1                 0.013   laminin, gamma 1 precursor 
CSMD3                 0.013   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.013   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.013   CUB and Sushi multiple domains 3 isoform 1 
LAMA4                 0.013   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.013   laminin, alpha 4 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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