Guide to the Human Genome
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Name: HCFC2 Sequence: fasta or formatted (792aa) NCBI GI: 7019405
Description:

host cell factor C2

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         54           2
 C cysteine            2.1         17           2
 D aspartate           4.2         33           2
 E glutamate           4.7         37           1
 F phenylalanine       3.0         24           1
 G glycine             7.4         59           3
 H histidine           2.5         20           1
 I isoleucine          4.4         35           2
 K lysine              5.8         46           2
 L leucine             7.2         57           2
 M methionine          1.6         13           1
 N asparagine          5.6         44           3
 P proline             6.9         55           3
 Q glutamine           3.3         26           2
 R arginine            4.4         35           2
 S serine             10.0         79           3
 T threonine           7.4         59           2
 V valine              7.1         56           2
 W tryptophan          2.0         16           1
 Y tyrosine            3.4         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   host cell factor C2 
HCFC1                 0.354   host cell factor 1 
KLHDC3                0.055   kelch domain containing 3 
KLHDC2                0.044   kelch domain containing 2 
RABEPK                0.043   Rab9 effector protein with kelch motifs 
LZTR1                 0.035   leucine-zipper-like transcription regulator 1 
KLHDC1                0.035   kelch domain containing 1 
FBXO42                0.028   F-box protein 42 
KLHDC10               0.027   kelch domain containing 10 
ATRNL1                0.024   attractin-like 1 
KLHDC4                0.024   kelch domain containing 4 
FNDC3B                0.019   fibronectin type III domain containing 3B 
FNDC3B                0.019   fibronectin type III domain containing 3B 
ATRN                  0.017   attractin isoform 2 
ATRN                  0.017   attractin isoform 1 
MEGF8                 0.017   multiple EGF-like-domains 8 
NFASC                 0.016   neurofascin isoform 3 precursor 
NFASC                 0.016   neurofascin isoform 2 precursor 
NFASC                 0.016   neurofascin isoform 4 precursor 
TTN                   0.016   titin isoform N2-A 
TTN                   0.016   titin isoform novex-2 
TTN                   0.016   titin isoform novex-1 
TTN                   0.016   titin isoform N2-B 
NRCAM                 0.015   neuronal cell adhesion molecule isoform A precursor ...
NRCAM                 0.015   neuronal cell adhesion molecule isoform B precursor ...
SDK2                  0.013   sidekick 2 
KLHL29                0.013   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.013   PREDICTED: kelch repeat and BTB (POZ) domain contai...
KLHL33                0.012   kelch-like 33 
LOC100294236          0.012   PREDICTED: similar to diffuse panbronchiolitis crit...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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