Guide to the Human Genome
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Name: KLHDC1 Sequence: fasta or formatted (406aa) NCBI GI: 26190616
Description:

kelch domain containing 1

Referenced in:

Kelch Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         16           3
 C cysteine            3.4         14           1
 D aspartate           6.9         28           2
 E glutamate           5.7         23           2
 F phenylalanine       3.7         15           1
 G glycine             8.1         33           2
 H histidine           3.7         15           1
 I isoleucine          5.9         24           1
 K lysine              4.9         20           2
 L leucine             9.9         40           2
 M methionine          1.7          7           1
 N asparagine          4.9         20           1
 P proline             4.2         17           2
 Q glutamine           4.2         17           2
 R arginine            4.7         19           2
 S serine              5.9         24           2
 T threonine           5.9         24           2
 V valine              4.2         17           2
 W tryptophan          4.2         17           1
 Y tyrosine            3.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   kelch domain containing 1 
KLHDC2                0.378   kelch domain containing 2 
LZTR1                 0.071   leucine-zipper-like transcription regulator 1 
HCFC2                 0.068   host cell factor C2 
HCFC1                 0.063   host cell factor 1 
FBXO42                0.061   F-box protein 42 
KLHDC3                0.057   kelch domain containing 3 
KLHDC10               0.051   kelch domain containing 10 
RABEPK                0.042   Rab9 effector protein with kelch motifs 
KLHDC4                0.037   kelch domain containing 4 
ATRNL1                0.027   attractin-like 1 
KLHL12                0.023   kelch-like 12 
KLHL14                0.023   kelch-like 14 
MKLN1                 0.020   muskelin 1, intracellular mediator containing kelch ...
MKLN1                 0.020   muskelin 1, intracellular mediator containing kelch...
MEGF8                 0.020   multiple EGF-like-domains 8 
KLHDC8A               0.019   kelch domain containing 8A 
KLHL9                 0.016   kelch-like 9 
KLHL33                0.015   kelch-like 33 
KLHL18                0.015   kelch-like 18 
KLHL22                0.015   kelch-like 
KLHDC6                0.015   kelch domain containing 6 
KLHDC8B               0.015   kelch domain containing 8B 
KLHL13                0.014   kelch-like 13 
KLHL1                 0.014   kelch-like 1 protein 
KLHL23                0.014   kelch-like 23 
ATRN                  0.014   attractin isoform 2 
ATRN                  0.014   attractin isoform 1 
KLHL5                 0.014   kelch-like 5 isoform 3 
KLHL5                 0.014   kelch-like 5 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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