Guide to the Human Genome
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Name: ATRN Sequence: fasta or formatted (1429aa) NCBI GI: 21450861
Description:

attractin isoform 1

Referenced in:

Epidermal Growth Factor

Other entries for this name:
alt prot [1272aa] attractin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1        102           7
 C cysteine            6.2         88           1
 D aspartate           4.5         65           2
 E glutamate           4.5         65           2
 F phenylalanine       4.1         59           2
 G glycine             7.3        105           2
 H histidine           2.9         42           2
 I isoleucine          3.8         54           1
 K lysine              4.3         62           2
 L leucine             7.8        112           8
 M methionine          2.1         30           1
 N asparagine          6.1         87           2
 P proline             5.2         75           3
 Q glutamine           3.6         52           2
 R arginine            4.8         68           3
 S serine              8.4        120           2
 T threonine           5.5         79           2
 V valine              5.7         81           3
 W tryptophan          2.2         31           1
 Y tyrosine            3.6         52           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   attractin isoform 1 
ATRN                  0.895   attractin isoform 2 
ATRNL1                0.577   attractin-like 1 
MEGF8                 0.062   multiple EGF-like-domains 8 
LAMA1                 0.018   laminin, alpha 1 precursor 
LAMA2                 0.017   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.017   laminin alpha 2 subunit isoform a precursor 
BMP1                  0.017   bone morphogenetic protein 1 isoform 3 precursor [Hom...
LAMB2                 0.016   laminin, beta 2 precursor 
LAMA3                 0.016   laminin alpha 3 subunit isoform 1 
LAMA3                 0.016   laminin alpha 3 subunit isoform 4 
LAMA3                 0.016   laminin alpha 3 subunit isoform 3 
LAMA3                 0.016   laminin alpha 3 subunit isoform 2 
LAMC1                 0.016   laminin, gamma 1 precursor 
LAMB4                 0.016   laminin, beta 4 
TLL1                  0.016   tolloid-like 1 
TLL2                  0.015   tolloid-like 2 
CSMD2                 0.015   CUB and Sushi multiple domains 2 
USH2A                 0.015   usherin isoform B 
USH2A                 0.015   usherin isoform A 
MEGF11                0.015   multiple EGF-like-domains 11 
CSMD3                 0.014   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.014   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.014   CUB and Sushi multiple domains 3 isoform 1 
KLHDC3                0.014   kelch domain containing 3 
NTNG1                 0.014   netrin G1 isoform 1 
LAMC3                 0.014   laminin, gamma 3 precursor 
CUBN                  0.014   cubilin 
PAMR1                 0.014   regeneration associated muscle protease isoform b [H...
HSPG2                 0.013   heparan sulfate proteoglycan 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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