Guide to the Human Genome
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Name: MAGEE1 Sequence: fasta or formatted (957aa) NCBI GI: 20143482
Description:

melanoma antigen family E, 1

Referenced in:

Melanoma Antigen Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         62           3
 C cysteine            0.8          8           1
 D aspartate           3.4         33           1
 E glutamate           8.3         79           2
 F phenylalanine       2.8         27           2
 G glycine             7.4         71           3
 H histidine           1.4         13           1
 I isoleucine          3.2         31           1
 K lysine              3.3         32           2
 L leucine             7.8         75           2
 M methionine          2.0         19           2
 N asparagine          2.8         27           2
 P proline            11.7        112           2
 Q glutamine           3.0         29           2
 R arginine            5.9         56           6
 S serine             11.9        114           3
 T threonine           7.5         72           2
 V valine              6.7         64           2
 W tryptophan          1.1         11           1
 Y tyrosine            2.3         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanoma antigen family E, 1 
MAGEE2                0.179   melanoma antigen family E, 2 
MAGEF1                0.106   melanoma antigen family F, 1 
NDNL2                 0.103   necdin-like 2 
MAGEL2                0.102   MAGE-like protein 2 
MAGED2                0.093   melanoma antigen family D, 2 
MAGED2                0.093   melanoma antigen family D, 2 
MAGED2                0.093   melanoma antigen family D, 2 
TRO                   0.089   trophinin isoform 2 
TRO                   0.089   trophinin isoform 2 
TRO                   0.087   trophinin isoform 5 
MAGED1                0.087   melanoma antigen family D, 1 isoform a 
MAGED1                0.086   melanoma antigen family D, 1 isoform b 
MAGED1                0.086   melanoma antigen family D, 1 isoform b 
MAGEB16               0.086   melanoma antigen family B, 16 
MAGEB4                0.082   melanoma antigen family B, 4 
MAGEB18               0.082   melanoma antigen family B, 18 
MAGEC1                0.081   melanoma antigen family C, 1 
MAGEB10               0.080   melanoma antigen family B, 10 
MAGEA10               0.079   melanoma antigen family A, 10 
MAGEA10               0.079   melanoma antigen family A, 10 
MAGED4B               0.078   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.078   melanoma antigen family D, 4B isoform 1 
MAGED4B               0.078   melanoma antigen family D, 4B isoform 1 
MAGED4                0.078   melanoma antigen family D, 4 
MAGEB2                0.077   melanoma antigen family B, 2 
MAGEB17               0.077   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.077   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.077   PREDICTED: melanoma antigen family B, 17 
MAGEB1                0.076   melanoma antigen family B, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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