Guide to the Human Genome
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Name: GOPC Sequence: fasta or formatted (454aa) NCBI GI: 62868213
Description:

golgi associated PDZ and coiled-coil motif containing isoform b

Referenced in:

Coiled-Coil Proteins
PDZ Domain
ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [462aa] golgi associated PDZ and coiled-coil motif containing isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         38           3
 C cysteine            1.5          7           1
 D aspartate           6.8         31           2
 E glutamate           9.3         42           1
 F phenylalanine       1.3          6           1
 G glycine             9.5         43           3
 H histidine           4.4         20           1
 I isoleucine          4.2         19           1
 K lysine              8.1         37           2
 L leucine            11.5         52           3
 M methionine          1.3          6           1
 N asparagine          2.4         11           1
 P proline             3.5         16           2
 Q glutamine           5.5         25           2
 R arginine            4.4         20           2
 S serine              5.5         25           2
 T threonine           3.5         16           1
 V valine              6.4         29           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   golgi associated PDZ and coiled-coil motif containin... 
GOPC                  0.991   golgi associated PDZ and coiled-coil motif containing...
SNTB2                 0.068   basic beta 2 syntrophin 
SNTB1                 0.066   basic beta 1 syntrophin 
SNTA1                 0.060   acidic alpha 1 syntrophin 
SNTG2                 0.057   syntrophin, gamma 2 
LIN7C                 0.055   lin-7 homolog C 
LIN7A                 0.055   lin-7 homolog A 
LIN7B                 0.055   lin-7 homolog B 
SNTG1                 0.051   syntrophin, gamma 1 
DFNB31                0.045   CASK-interacting protein CIP98 isoform 1 
INADL                 0.043   InaD-like 
DLG3                  0.038   synapse-associated protein 102 isoform a 
PTPN13                0.038   protein tyrosine phosphatase, non-receptor type 13 i...
MPP7                  0.038   palmitoylated membrane protein 7 
DLG3                  0.038   synapse-associated protein 102 isoform b 
GRIP1                 0.037   glutamate receptor interacting protein 1 
USH1C                 0.035   harmonin isoform b3 
USH1C                 0.035   harmonin isoform a 
DLG2                  0.034   chapsyn-110 isoform 3 
DLG2                  0.034   chapsyn-110 isoform 1 
DLG2                  0.034   chapsyn-110 isoform 2 
SCRIB                 0.034   scribble isoform b 
SCRIB                 0.034   scribble isoform a 
DLG4                  0.034   post-synaptic density protein 95 isoform 1 
DLG4                  0.034   post-synaptic density protein 95 isoform 2 
GRIP2                 0.034   glutamate receptor interacting protein 2 
PDZD2                 0.034   PDZ domain containing 2 
MAGI1                 0.034   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.034   membrane associated guanylate kinase, WW and PDZ dom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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