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Search of human proteins with 5730095
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 549 e-157
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 87 2e-17
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 74 2e-13
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 72 5e-13
gi|23238197 tumor necrosis factor receptor superfamily, member 1... 68 9e-12
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 67 2e-11
gi|148743793 osteoprotegerin precursor [Homo sapiens] 67 2e-11
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 65 4e-11
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 64 1e-10
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 64 1e-10
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 62 4e-10
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 61 8e-10
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 59 3e-09
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 54 1e-07
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 50 1e-06
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 48 9e-06
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 45 5e-05
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 45 6e-05
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 45 6e-05
gi|31377568 signal peptide, CUB domain, EGF-like 3 [Homo sapiens] 44 1e-04
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 44 2e-04
gi|169212026 PREDICTED: keratin associated protein [Homo sapiens] 43 3e-04
gi|10190748 CEGP1 protein [Homo sapiens] 42 7e-04
gi|169211819 PREDICTED: keratin associated protein [Homo sapiens] 42 7e-04
gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo ... 42 7e-04
gi|20336246 proprotein convertase subtilisin/kexin type 5 prepro... 42 7e-04
gi|148886654 polydom [Homo sapiens] 41 9e-04
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 40 0.002
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 40 0.002
gi|118572606 hemicentin 1 [Homo sapiens] 40 0.003
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 549 bits (1415), Expect = e-157
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR 60
MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR
Sbjct: 1 MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR 60
Query: 61 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC 120
TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC
Sbjct: 61 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC 120
Query: 121 CFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPARE 180
CFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPARE
Sbjct: 121 CFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPARE 180
Query: 181 PGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPVQTTQEEDG 240
PGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPVQTTQEEDG
Sbjct: 181 PGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPVQTTQEEDG 240
Query: 241 CSCRFPEEEEGGCEL 255
CSCRFPEEEEGGCEL
Sbjct: 241 CSCRFPEEEEGGCEL 255
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 86.7 bits (213), Expect = 2e-17
Identities = 56/165 (33%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSS-AGGQRTCDICRQ-CKGVFRTRKECSST 81
C CPAGT+ C N ++CS CP +F+ G C C Q C + C++
Sbjct: 67 CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAAL 126
Query: 82 SNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKG-------CKDCCFGTFNDQKRGI-- 132
++ EC C PG A C+ C G + KKG CK C GTF+D +
Sbjct: 127 TDRECTCPPGMFQSNATCAP-HTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMK 185
Query: 133 CRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAP 177
C+ +T+C V+ GTKE D VCG P+ SS T P+P
Sbjct: 186 CKAYTDCLSQNLVVIKPGTKETDNVCGTLPS-----FSSSTSPSP 225
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 73.6 bits (179), Expect = 2e-13
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 45/204 (22%)
Query: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQ-------RTCDICRQCKGVFRTRK 76
C+ C G + C + +C PC P+ + + + + CD + V
Sbjct: 47 CNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAG-- 104
Query: 77 ECSSTSNAECDCTPGFHCLGAGCSMCEQ--DCKQGQ------ELTKKG-CKDCCFGTFND 127
+ST+ C CT G+H C C + +C G +L K CK C G F+D
Sbjct: 105 --NSTTPRRCACTAGYHW-SQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSD 161
Query: 128 --QKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPAREPGHSP 185
CRPWTNC+ GK V +GT++ D VC S PAR+P + P
Sbjct: 162 AFSSTDKCRPWTNCTFLGKRVEHHGTEKSDAVCSSS--------------LPARKPPNEP 207
Query: 186 QI----ISFFLALTSTALLFLLFF 205
+ + L S AL+ + F
Sbjct: 208 HVYLPGLIILLLFASVALVAAIIF 231
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 72.0 bits (175), Expect = 5e-13
Identities = 49/164 (29%), Positives = 65/164 (39%), Gaps = 25/164 (15%)
Query: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQRT-CDICRQCKGVFRTRK--ECSS 80
CS CP GT+ C R+ +C+ C NS++ T C +CR C V + C+S
Sbjct: 59 CSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTS 118
Query: 81 TSNAECDCTPGFHCLGAG--CSMCE--QDCKQGQELTKKG--------CKDCCFGTFNDQ 128
+C C PG C C+ CE DC G E K C C G F +
Sbjct: 119 KRKTQCRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNT 178
Query: 129 KR--GICRPWTNCSLDGKSVLVNGTKERDVVC----GPSPADLS 166
C+P T C G GT + D C P P ++S
Sbjct: 179 SSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPPEMS 222
>gi|23238197 tumor necrosis factor receptor superfamily, member 18
isoform 3 precursor [Homo sapiens]
Length = 234
Score = 67.8 bits (164), Expect = 9e-12
Identities = 61/199 (30%), Positives = 81/199 (40%), Gaps = 41/199 (20%)
Query: 61 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQD-CKQGQELTKKG--- 116
T CR G +EC S + C P FHC C+ C C GQ + +G
Sbjct: 54 TTRCCRDYPG-----EECCSEWDCMC-VQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFS 107
Query: 117 ----CKDCCFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSV 172
C DC GTF+ G C+PWT+C+ G + G K + VC P
Sbjct: 108 FGFQCIDCASGTFSGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPG----------- 156
Query: 173 TPPAPAREPGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPV 232
+PPA EP ++ LA+ + LL L L + + RK L + P
Sbjct: 157 SPPA---EPLGWLTVV--LLAVAACVLLLTSAQLGLH---IWQLRKTQLLLEVPP----- 203
Query: 233 QTTQEEDGCSCRFPEEEEG 251
ED SC+FPEEE G
Sbjct: 204 ---STEDARSCQFPEEERG 219
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 67.0 bits (162), Expect = 2e-11
Identities = 59/199 (29%), Positives = 84/199 (42%), Gaps = 34/199 (17%)
Query: 61 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQD-CKQGQELTKKG--- 116
T CR G +EC S + C P FHC C+ C C GQ + +G
Sbjct: 54 TTRCCRDYPG-----EECCSEWDCMC-VQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFS 107
Query: 117 ----CKDCCFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSV 172
C DC GTF+ G C+PWT+C+ G + G K + VC P
Sbjct: 108 FGFQCIDCASGTFSGGHEGHCKPWTDCTQFGFLTVFPGNKTHNAVCVPG----------- 156
Query: 173 TPPAPAREPGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPV 232
+PPA EP ++ LA+ + LL L L + + R + ++ + + V
Sbjct: 157 SPPA---EPLGWLTVV--LLAVAACVLLLTSAQLGLH---IWQLRSQCMWPRETQLLLEV 208
Query: 233 QTTQEEDGCSCRFPEEEEG 251
+ ED SC+FPEEE G
Sbjct: 209 PPS-TEDARSCQFPEEERG 226
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 66.6 bits (161), Expect = 2e-11
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 16 LNFERTRSLQDPCSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGV 71
L+++ S Q C CP GT+ C +C+PCP + ++ + T D C C V
Sbjct: 29 LHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSW--HTSDECLYCSPV 86
Query: 72 FR----TRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKG-------CKDC 120
+ ++EC+ T N C+C G + C + + C G + + G CK C
Sbjct: 87 CKELQYVKQECNRTHNRVCECKEGRYLEIEFC-LKHRSCPPGFGVVQAGTPERNTVCKRC 145
Query: 121 CFGTFNDQ--KRGICRPWTNCSLDGKSVLVNGTKERDVVC 158
G F+++ + CR TNCS+ G + G D +C
Sbjct: 146 PDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGNATHDNIC 185
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 65.5 bits (158), Expect = 4e-11
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 19/155 (12%)
Query: 28 CSNCPAG----TFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQC--KGVFRTRKECSST 81
C C G + C ++N +C PC P ++ + C C C + ++ C++T
Sbjct: 43 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTAT 102
Query: 82 SNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDCCFGTFNDQKRGICRPWTNCSL 141
+ C C G L + K G + C C G F+ C+PWTNC+L
Sbjct: 103 QDTVCRCRAGTQPLDS--------YKPGVD-----CAPCPPGHFSPGDNQACKPWTNCTL 149
Query: 142 DGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPA 176
GK L + D +C + + PPA
Sbjct: 150 AGKHTLQPASNSSDAICEDRDPPATQPQETQGPPA 184
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 64.3 bits (155), Expect = 1e-10
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKE----CS 79
C+ CP GTF C + C PCPP ++ + CR C + R+E C
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNY--LERCRYCNVLCGEREEEARACH 106
Query: 80 STSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKG-------CKDCCFGTFNDQKRGI 132
+T N C C GF AG + C G + G C+ C GTF+
Sbjct: 107 ATHNRACRCRTGFFA-HAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSS 165
Query: 133 --CRPWTNCSLDGKSVLVNGTKERDVVC 158
C+P NC+ G ++ V G+ D +C
Sbjct: 166 EQCQPHRNCTALGLALNVPGSSSHDTLC 193
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 29 SNCPAGTFC----DNNRNQICSPCPPNSFS-SAGGQRTCDICRQCKGV-FRTRKECSSTS 82
++CP G ++N C PCPP +FS S+ C R C + SS+
Sbjct: 130 ASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSH 189
Query: 83 NAECDCTPGF 92
+ C GF
Sbjct: 190 DTLCTSCTGF 199
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 64.3 bits (155), Expect = 1e-10
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKE----CS 79
C+ CP GTF C + C PCPP ++ + CR C + R+E C
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNY--LERCRYCNVLCGEREEEARACH 106
Query: 80 STSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKG-------CKDCCFGTFNDQKRGI 132
+T N C C GF AG + C G + G C+ C GTF+
Sbjct: 107 ATHNRACRCRTGFFA-HAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSS 165
Query: 133 --CRPWTNCSLDGKSVLVNGTKERDVVC 158
C+P NC+ G ++ V G+ D +C
Sbjct: 166 EQCQPHRNCTALGLALNVPGSSSHDTLC 193
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 29 SNCPAGTFC----DNNRNQICSPCPPNSFS-SAGGQRTCDICRQCKGV-FRTRKECSSTS 82
++CP G ++N C PCPP +FS S+ C R C + SS+
Sbjct: 130 ASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSH 189
Query: 83 NAECDCTPGF 92
+ C GF
Sbjct: 190 DTLCTSCTGF 199
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 62.4 bits (150), Expect = 4e-10
Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 26/180 (14%)
Query: 28 CSNCPAG----TFCDNNRNQICSPCPPNSFSSAGGQ-RTCDIC-RQCKGVFRTRKECSST 81
CS C G FC + +C C ++++ C C +C + C+
Sbjct: 54 CSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTRE 113
Query: 82 SNAECDCTPGFHCL---GAGCSMCE--QDCKQGQELTKKG-------CKDCCFGTFND-- 127
N C C PG++C GC +C + C+ G + + G CK C GTF++
Sbjct: 114 QNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTT 173
Query: 128 QKRGICRPWTNCSLDGKSVLVNGTKERDVVC-GPSPA-DLSPGASSVTPPAPAREPGHSP 185
ICRP C++ V + G D VC SP ++PGA + P R P
Sbjct: 174 SSTDICRPHQICNV----VAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQP 229
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 61.2 bits (147), Expect = 8e-10
Identities = 42/151 (27%), Positives = 57/151 (37%), Gaps = 18/151 (11%)
Query: 28 CSNCPAG----TFCDNNRNQICSPCPPNSFSSAGGQRT-CDICRQCKGVFRTRKECSSTS 82
CS C G + C C PC + F + T C + C R + TS
Sbjct: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
Query: 83 NAE--CDCTPGFHCLGAGCSMC--EQDCKQGQELTKKG-------CKDCCFGTFNDQKRG 131
+ C C G+HC C C + C G + + C+ C G F++
Sbjct: 98 ETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSA 157
Query: 132 I--CRPWTNCSLDGKSVLVNGTKERDVVCGP 160
C PWT+C V GT + DVVCGP
Sbjct: 158 FEKCHPWTSCETKDLVVQQAGTNKTDVVCGP 188
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 59.3 bits (142), Expect = 3e-09
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 28 CSNCPAG----TFCDNNRNQICSPCPPNSF-SSAGGQRTCDICRQCKGVF--RTRKECSS 80
C C G C +C PCPP ++ + G C C+ C R + CS
Sbjct: 54 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSR 113
Query: 81 TSNAECDCTPGFHCL---GAGCSMCE--QDCKQGQELTKKG-------CKDCCFGTFN-D 127
T NA C C+PG C+ G C+ C GQ + K G C++C GTF+ +
Sbjct: 114 TENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPN 173
Query: 128 QKRGICRPWTNCS 140
C+ T CS
Sbjct: 174 GTLEECQHQTKCS 186
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 28 CSNCPAGTF----CDNNRNQI-CSPCPPN-SFSSAGGQRT-CDICRQCKGVFRTRKECSS 80
C C GTF CD +R C PC P SFS R C+ CR C R C+
Sbjct: 40 CQMCEPGTFLVKDCDQHRKAAQCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRN-CTI 98
Query: 81 TSNAECDCTPGFHCLGAGCSMCE 103
T+NAEC C G+ C C+ C+
Sbjct: 99 TANAECACRNGWQCRDKECTECD 121
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 50.4 bits (119), Expect = 1e-06
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 61 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQD-CKQGQELTKKG--- 116
T CR G +EC S + C P FHC C+ C C GQ + +G
Sbjct: 54 TTRCCRDYPG-----EECCSEWDCMC-VQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFS 107
Query: 117 ----CKDCCFGTFNDQKRGICRPWTNC 139
C DC GTF+ G C+PWT+C
Sbjct: 108 FGFQCIDCASGTFSGGHEGHCKPWTDC 134
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 47.8 bits (112), Expect = 9e-06
Identities = 40/156 (25%), Positives = 55/156 (35%), Gaps = 18/156 (11%)
Query: 28 CSNCPAG----TFCDNNRNQICSPCPPNSFSSAGGQRT-CDICRQCKGVFRTRKECSSTS 82
CS C G + C C PC + F + T C + C R + TS
Sbjct: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
Query: 83 NAE--CDCTPGFHCLGAGCSMC--EQDCKQG-------QELTKKGCKDCCFGTFNDQKRG 131
+ C C G+HC C C + C G ++ C+ C G F++
Sbjct: 98 ETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSA 157
Query: 132 I--CRPWTNCSLDGKSVLVNGTKERDVVCGPSPADL 165
C PWT +S + RD VC P A L
Sbjct: 158 FEKCHPWTRSPGSAESPGGDPHHLRDPVCHPLGAGL 193
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 45.4 bits (106), Expect = 5e-05
Identities = 44/172 (25%), Positives = 66/172 (38%), Gaps = 30/172 (17%)
Query: 37 CDNNRNQICSPCPPN-SFSSA-GGQRTCDICRQCKGVFRTRKECSSTSNAECDCTPGFH- 93
C N+ +C PC + +FS C C +C G+ C +A C C G++
Sbjct: 57 CGANQT-VCEPCLDSVTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQ 115
Query: 94 ------CLGAGCSMCEQ------DCKQGQELTKKGCKDCCFGTFNDQKRGI--CRPWTNC 139
C C +CE C+ Q C++C GT++D+ + C P T C
Sbjct: 116 DETTGRC--EACRVCEAGSGLVFSCQDKQNTV---CEECPDGTYSDEANHVDPCLPCTVC 170
Query: 140 SLDGKSVLVNGTKERDVVCGPSPA-----DLSPGASSVTPPAPAREPGHSPQ 186
D + L T+ D C P P S T P+ +EP P+
Sbjct: 171 E-DTERQLRECTRWADAECEEIPGRWITRSTPPEGSDSTAPS-TQEPEAPPE 220
Score = 44.7 bits (104), Expect = 8e-05
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 19 ERTRSLQDPCSNCPAGT----FCDNNRNQICSPCPPNSFSS-AGGQRTCDICRQCKGVFR 73
+ T + C C AG+ C + +N +C CP ++S A C C C+ R
Sbjct: 116 DETTGRCEACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTER 175
Query: 74 TRKECSSTSNAECDCTPG 91
+EC+ ++AEC+ PG
Sbjct: 176 QLRECTRWADAECEEIPG 193
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 45.1 bits (105), Expect = 6e-05
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 48 CPPNSFSSAGGQRTCDICRQ-CKGVFRTRKECSSTSNAECDCTPGFHCLGAGC---SMC- 102
CPPNS S + D C G+F CS C+C PGF G C S C
Sbjct: 1426 CPPNSKYSLCAKPCPDTCHSGFSGMF-----CSDRCVEACECNPGFVLSGLECIPRSQCG 1480
Query: 103 -----EQDCKQGQELTKKGCKDCCFGTFNDQKRGICRPW 136
K G+ K GCK+ C N++ R C+PW
Sbjct: 1481 CLHPAGSYFKVGERWYKPGCKELCVCESNNRIR--CQPW 1517
Score = 30.0 bits (66), Expect = 2.0
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 16/82 (19%)
Query: 48 CPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAECDCTPGF-----HCLGAGCSMC 102
CPPN+ +C CK R C C C PGF HC+ A C
Sbjct: 1044 CPPNA-----RYESCACPASCKS---PRPSCGPLCREGCVCNPGFLFSDNHCIQASSCNC 1095
Query: 103 ---EQDCKQGQELTKKGCKDCC 121
+ G E C + C
Sbjct: 1096 FYNNDYYEPGAEWFSPNCTEHC 1117
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 45.1 bits (105), Expect = 6e-05
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 48 CPPNSFSSAGGQRTCDICRQ-CKGVFRTRKECSSTSNAECDCTPGFHCLGAGC---SMC- 102
CPPNS S + D C G+F CS C+C PGF G C S C
Sbjct: 1426 CPPNSKYSLCAKPCPDTCHSGFSGMF-----CSDRCVEACECNPGFVLSGLECIPRSQCG 1480
Query: 103 -----EQDCKQGQELTKKGCKDCCFGTFNDQKRGICRPW 136
K G+ K GCK+ C N++ R C+PW
Sbjct: 1481 CLHPAGSYFKVGERWYKPGCKELCVCESNNRIR--CQPW 1517
Score = 30.0 bits (66), Expect = 2.0
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 16/82 (19%)
Query: 48 CPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAECDCTPGF-----HCLGAGCSMC 102
CPPN+ +C CK R C C C PGF HC+ A C
Sbjct: 1044 CPPNA-----RYESCACPASCKS---PRPSCGPLCREGCVCNPGFLFSDNHCIQASSCNC 1095
Query: 103 ---EQDCKQGQELTKKGCKDCC 121
+ G E C + C
Sbjct: 1096 FYNNDYYEPGAEWFSPNCTEHC 1117
>gi|31377568 signal peptide, CUB domain, EGF-like 3 [Homo sapiens]
Length = 993
Score = 44.3 bits (103), Expect = 1e-04
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 28 CSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAEC- 86
C +CP GT+ Q C PCP +F GQ +CD+C +T+ C
Sbjct: 636 CVSCPQGTYYHGQTEQ-CVPCPAGTFQEREGQLSCDLCPGSD----AHGPLGATNVTTCA 690
Query: 87 -DCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDCCF 122
C PG H + G C Q C +G + G + CF
Sbjct: 691 GQCPPGQHSVD-GFKPC-QPCPRGTYQPEAG-RTLCF 724
Score = 31.6 bits (70), Expect = 0.70
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 28 CSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDIC--RQCKG 70
C C G++ + R CS CP N+ + G + C RQC G
Sbjct: 762 CIRCAMGSYQPDFRQNFCSRCPGNTSTDFDGSTSVAQCKNRQCGG 806
Score = 28.1 bits (61), Expect = 7.8
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 27 PCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQ---RTCDICRQC 68
PC CP GT+ +C PC + G + CD QC
Sbjct: 705 PCQPCPRGTYQPEAGRTLCFPCGGGLTTKHEGAISFQDCDTKVQC 749
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 43.5 bits (101), Expect = 2e-04
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 16 LNFERTRSLQDPCSN--CPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFR 73
+N E+ SL DPC + CPA ++C N+ + C P + CD+ C+
Sbjct: 1785 INVEQGCSLPDPCDSNPCPANSYCSNDWDSYSCSCDPGYYGD-NCTNVCDL-NPCEHQSV 1842
Query: 74 TRKECSSTSNAECDCTPGFHCLGAGC-SMCEQDCKQG 109
++ S+ C+C P + LG C + +Q C +G
Sbjct: 1843 CTRKPSAPHGYTCECPPNY--LGPYCETRIDQPCPRG 1877
>gi|169212026 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 42.7 bits (99), Expect = 3e-04
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 29 SNCPAGTFCDNNRNQ-ICS---PCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNA 84
S C + C ++ Q ICS PC P S+ Q TC + ++C+ V C STS
Sbjct: 296 STCQEPSCCVSSICQPICSEPSPCSPAVCVSSPCQPTCYVVKRCRSVCPEPVSCPSTSCR 355
Query: 85 ECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDCCFG-TFNDQKRGICRP 135
C+PG + ++C C + + + C ++ R ICRP
Sbjct: 356 PLSCSPG----SSASAICRPTCPRTFYIPSSSKRPCSATISYRPVSRPICRP 403
Score = 28.5 bits (62), Expect = 5.9
Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 27/154 (17%)
Query: 31 CPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAECDCTP 90
C T C+ + + + S P A + +C + C+ V C C P
Sbjct: 133 CFEATICEPSCS-VSSCAQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCVPTSCQP 191
Query: 91 GFHCLGAGCS--MCEQDCKQGQELTKKGCK------DCCFGTFNDQKRGICRPWTNCSLD 142
C + C +CE C C+ CC + +C P CS+
Sbjct: 192 VL-CKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCC--------QPVC-PTPTCSVT 241
Query: 143 GKSVLVNGTKERDVVCGPSPADLSPGASSVTPPA 176
+ V C PSP + + SS+ PA
Sbjct: 242 SSC--------QAVCCDPSPCEPTCSESSICQPA 267
>gi|10190748 CEGP1 protein [Homo sapiens]
Length = 999
Score = 41.6 bits (96), Expect = 7e-04
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 25 QDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNA 84
++ C +C AGT+ D R + C CP +F + GQ TC+ C + G K + + +
Sbjct: 635 ENQCVSCRAGTYYDGARER-CILCPNGTFQNEEGQMTCEPCPR-PGNSGALKTPEAWNMS 692
Query: 85 ECD--CTPGFHCLG--AGCSMCEQDCKQGQELTKKGCKDC 120
EC C PG + A C +C Q E + C C
Sbjct: 693 ECGGLCQPGEYSADGFAPCQLCALGTFQ-PEAGRTSCFPC 731
Score = 32.0 bits (71), Expect = 0.54
Identities = 34/146 (23%), Positives = 49/146 (33%), Gaps = 45/146 (30%)
Query: 25 QDPCSNCPAGTFCDNNRNQICSPCP----------PNSFS-------------SAGGQRT 61
++ C CP GTF + C PCP P +++ SA G
Sbjct: 651 RERCILCPNGTFQNEEGQMTCEPCPRPGNSGALKTPEAWNMSECGGLCQPGEYSADGFAP 710
Query: 62 CDICR--------------QCKGVFRTRKECSSTSNAECD----CTPG--FHCLGAGCSM 101
C +C C G T+ + +TS +C+ C+PG ++ C
Sbjct: 711 CQLCALGTFQPEAGRTSCFPCGGGLATKHQ-GATSFQDCETRVQCSPGHFYNTTTHRCIR 769
Query: 102 CEQDCKQGQELTKKGCKDCCFGTFND 127
C Q E K C C T D
Sbjct: 770 CPVGTYQ-PEFGKNNCVSCPGNTTTD 794
Score = 31.2 bits (69), Expect = 0.92
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 49 PPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNA-ECDCTPGFHCLGAGCSMCEQDCK 107
PP +AG Q D C Q C +T + +C C PG+ G CE +
Sbjct: 33 PPGRGRAAGPQEDVDECAQGLDDCHADALCQNTPTSYKCSCKPGYQGEG---RQCEDIDE 89
Query: 108 QGQELTKKGCKDC 120
G EL DC
Sbjct: 90 CGNELNGGCVHDC 102
Score = 28.9 bits (63), Expect = 4.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 28 CSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDIC--RQCKG 70
C CP GT+ C CP N+ + G C R+C G
Sbjct: 767 CIRCPVGTYQPEFGKNNCVSCPGNTTTDFDGSTNITQCKNRRCGG 811
>gi|169211819 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 41.6 bits (96), Expect = 7e-04
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 29 SNCPAGTFCDNNRNQ-ICS---PCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNA 84
S C + C ++ Q ICS PC P S+ Q TC + ++C V C STS
Sbjct: 296 STCQEPSCCVSSICQPICSEPSPCSPAVCVSSPCQPTCYVVKRCPSVCPEPVSCPSTSCR 355
Query: 85 ECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDCCFG-TFNDQKRGICRP 135
C+PG + ++C C + + + C ++ R ICRP
Sbjct: 356 PLSCSPG----SSASAICRPTCPRTFYIPSSSKRPCSATISYRPVSRPICRP 403
Score = 29.3 bits (64), Expect = 3.5
Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 27/154 (17%)
Query: 31 CPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAECDCTP 90
C T C+ + + + S P A + +C + C+ V C C P
Sbjct: 133 CFEATVCEPSCS-VSSCAQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCVPTSCQP 191
Query: 91 GFHCLGAGCS--MCEQDCKQGQELTKKGCK------DCCFGTFNDQKRGICRPWTNCSLD 142
C + C +CE C C+ CC + +C P CS+
Sbjct: 192 VL-CKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCC--------QPVC-PTPTCSVT 241
Query: 143 GKSVLVNGTKERDVVCGPSPADLSPGASSVTPPA 176
+ V C PSP + S SS+ PA
Sbjct: 242 SSC--------QAVCCDPSPCEPSCSESSICQPA 267
>gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo
sapiens]
Length = 517
Score = 41.6 bits (96), Expect = 7e-04
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 29 SNCPAGTFCDNNRNQ-ICS---PCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNA 84
S C + C ++ Q ICS PC P S+ Q TC + ++C V C STS
Sbjct: 296 STCQEPSCCVSSICQPICSEPSPCSPAVCVSSPCQPTCYVVKRCPSVCPEPVSCPSTSCR 355
Query: 85 ECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDCCFG-TFNDQKRGICRP 135
C+PG + ++C C + + + C ++ R ICRP
Sbjct: 356 PLSCSPG----SSASAICRPTCPRTFYIPSSSKRPCSATISYRPVSRPICRP 403
Score = 29.3 bits (64), Expect = 3.5
Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 27/154 (17%)
Query: 31 CPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAECDCTP 90
C T C+ + + + S P A + +C + C+ V C C P
Sbjct: 133 CFEATVCEPSCS-VSSCAQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCVPTSCQP 191
Query: 91 GFHCLGAGCS--MCEQDCKQGQELTKKGCK------DCCFGTFNDQKRGICRPWTNCSLD 142
C + C +CE C C+ CC + +C P CS+
Sbjct: 192 VL-CKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCC--------QPVC-PTPTCSVT 241
Query: 143 GKSVLVNGTKERDVVCGPSPADLSPGASSVTPPA 176
+ V C PSP + S SS+ PA
Sbjct: 242 SSC--------QAVCCDPSPCEPSCSESSICQPA 267
>gi|20336246 proprotein convertase subtilisin/kexin type 5
preproprotein [Homo sapiens]
Length = 913
Score = 41.6 bits (96), Expect = 7e-04
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 26 DPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAE 85
D C +C G F + N + CP S+ ++CR+C K C+ N
Sbjct: 702 DQCMSCKYGYFLNEETNSCVTHCPDGSYQDT----KKNLCRKCS---ENCKTCTEFHNC- 753
Query: 86 CDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC 120
+C G G+ CS+ C+ G+ + C+ C
Sbjct: 754 TECRDGLSLQGSRCSV---SCEDGRYFNGQDCQPC 785
Score = 29.3 bits (64), Expect = 3.5
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 26 DPCSNCPAGTFCDNNR-NQICSPCPPNSFSSAGGQRTCDICR-QCKGVFRTRKECSSTSN 83
D C NC G F ++ R Q CS SS G ++C C C C+
Sbjct: 798 DGCINCTEGYFMEDGRCVQSCSISYYFDHSSENGYKSCKKCDISC-------LTCNGPGF 850
Query: 84 AECDCTPGFHCLGAGCSMCEQDCKQGQE 111
C P + L G CK E
Sbjct: 851 KNCTSCPSGYLLDLGMCQMGAICKDATE 878
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 41.2 bits (95), Expect = 9e-04
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 28 CSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNAECD 87
C NCP GT+ N + C C S+ GQ C +C G++ + S+ +
Sbjct: 999 CVNCPLGTYY-NLEHFTCESCRIGSYQDEEGQLECKLCP--SGMYTEYIHSRNISDCKAQ 1055
Query: 88 CTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC--CFGTFNDQKRG 131
C G + +G CE C G K G + C C + KRG
Sbjct: 1056 CKQGTYSY-SGLETCE-SCPLGTYQPKFGSRSCLSCPENTSTVKRG 1099
Score = 37.0 bits (84), Expect = 0.017
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 26/107 (24%)
Query: 22 RSLQDPCSNCPAGTFCDNNRN---QICSPCPPNSFSSAGGQRTCD--ICRQ--------C 68
+ LQ C+ CP+GT+ C PCP + +S G + + +CR+ C
Sbjct: 314 KGLQYECTACPSGTYKPEGSPGGISSCIPCPDENHTSPPGSTSPEDCVCREGYRASGQTC 373
Query: 69 KGV-----------FRTRKECSSTSNAECD--CTPGFHCLGAGCSMC 102
+ V + + C++ NA C C PGF +G+ +C
Sbjct: 374 ELVHCPALKPPENGYFIQNTCNNHFNAACGVRCHPGFDLVGSSIILC 420
Score = 28.5 bits (62), Expect = 5.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 26 DPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDIC 65
+ C +CP GT+ ++ C CP N+ + G C
Sbjct: 1067 ETCESCPLGTYQPKFGSRSCLSCPENTSTVKRGAVNISAC 1106
Score = 28.1 bits (61), Expect = 7.8
Identities = 15/57 (26%), Positives = 20/57 (35%)
Query: 21 TRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKE 77
+RS PC CP + N C CP + G R+ C F +E
Sbjct: 1116 SRSGLMPCHPCPRDYYQPNAGKAFCLACPFYGTTPFAGSRSITECSSFSSTFSAAEE 1172
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/123 (29%), Positives = 43/123 (34%), Gaps = 19/123 (15%)
Query: 31 CPAGTFCDNNR---NQICSP--CPPNSFSSAGGQ-----RTCDICRQCKGVFRTRKECSS 80
C C N+ N CS CPPN FS A G+ TCD+ C E +S
Sbjct: 914 CDGDNDCGNSEDESNATCSARTCPPNQFSCASGRCIPISWTCDLDDDCGD---RSDESAS 970
Query: 81 TSNAECDCTPGFHCLGAGCS----MCEQDCKQGQELTKKGCKDCCFGTFNDQKRGICRP- 135
+ C F C C C+ D G + GC C T G C P
Sbjct: 971 CAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCSHSCSSTQFKCNSGRCIPE 1030
Query: 136 -WT 137
WT
Sbjct: 1031 HWT 1033
Score = 32.0 bits (71), Expect = 0.54
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 27/140 (19%)
Query: 30 NCPAGT-----FCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKECSSTSNA 84
+CP G+ C ++ Q C P N + G + + R C GV ++C S+
Sbjct: 52 DCPDGSDEAPEICPQSKAQRCQP---NEHNCLGTELCVPMSRLCNGV----QDCMDGSD- 103
Query: 85 ECDCTPGFHC--LGAGCSM--CEQDCKQGQELTKKGCKDCCFGTFNDQKRG-ICRPWTNC 139
G HC L CS C+ C T G C +F Q G C+ + C
Sbjct: 104 -----EGPHCRELQGNCSRLGCQHHCVP----TLDGPTCYCNSSFQLQADGKTCKDFDEC 154
Query: 140 SLDGKSVLVNGTKERDVVCG 159
S+ G + + +CG
Sbjct: 155 SVYGTCSQLCTNTDGSFICG 174
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/166 (24%), Positives = 59/166 (35%), Gaps = 41/166 (24%)
Query: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQRT-CDICRQCKGVFRTRKECSSTS 82
C CP G F C C P+ + + T C C + V +T C+ S
Sbjct: 45 CYRCPMGLFPTQQCPQRPTDCRKQCEPDYYLDEADRCTACVTCSRDDLVEKT--PCAWNS 102
Query: 83 NAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDCCFGTFNDQKRGICRPWTNCSLD 142
+ C+C PG C + + C + C F +C
Sbjct: 103 SRVCECRPGMFCSTSAVNSCAR---------------CFF-------HSVCPA------- 133
Query: 143 GKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPAREP--GHSPQ 186
G V GT +++ VC P+ +SP +S P +EP G PQ
Sbjct: 134 GMIVKFPGTAQKNTVCEPASPGVSPACAS---PENCKEPSSGTIPQ 176
Score = 29.6 bits (65), Expect = 2.7
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 27 PCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKE-CSSTSNAE 85
P CP G+ + R Q C P+ + G+ C C C K C+ S+
Sbjct: 229 PTQPCPEGS--GDCRKQ----CEPDYYLDEAGR--CTACVSCSRDDLVEKTPCAWNSSRT 280
Query: 86 CDCTPGFHC 94
C+C PG C
Sbjct: 281 CECRPGMIC 289
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 39.7 bits (91), Expect = 0.003
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 25 QDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRT-RKECSSTSN 83
+D C C+N R CP + S G R C +C+ V + +CS+T
Sbjct: 5277 KDGTHQCRYNQICENTRGSYRCVCP-RGYRSQGVGRPCMDINECEQVPKPCAHQCSNTPG 5335
Query: 84 A-ECDCTPGFHCLGAGCS 100
+ +C C PG H LG G S
Sbjct: 5336 SFKCICPPGQHLLGDGKS 5353
Score = 36.6 bits (83), Expect = 0.022
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 3 NSCYNIVATL-------LLVLNFERTRSLQDPCS----NCPAGTFCDNNRNQI-CSPCPP 50
+SC+N + T L + RT D C+ C AG CDN C
Sbjct: 5119 HSCHNAMGTYYCSCPKGLTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCG 5178
Query: 51 NSFSSAGGQRTCDICRQCKGVFRTRKEC-SSTSNAECDCTPGFHCLGAGC---SMCEQD- 105
+ F +C +C+ + C ++ + C C PG+ G C + C Q+
Sbjct: 5179 SGFRRTSDGLSCQDINECQESSPCHQRCFNAIGSFHCGCEPGYQLKGRKCMDVNECRQNV 5238
Query: 106 CKQGQEL--TKKG--CKDCCFGTFNDQKRGICRPWTNC 139
C+ Q T+ G C D C + G C C
Sbjct: 5239 CRPDQHCKNTRGGYKCIDLCPNGMTKAENGTCIDIDEC 5276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,298,878
Number of Sequences: 37866
Number of extensions: 645652
Number of successful extensions: 3396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 2993
Number of HSP's gapped (non-prelim): 474
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.