Guide to the Human Genome
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Name: CELSR2 Sequence: fasta or formatted (2923aa) NCBI GI: 13325064
Description:

cadherin EGF LAG seven-pass G-type receptor 2

Referenced in:

Cadherins and Related Proteins
Epidermal Growth Factor
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        205           3
 C cysteine            3.0         87           1
 D aspartate           5.9        173           2
 E glutamate           5.7        168          10
 F phenylalanine       3.8        110           3
 G glycine             8.7        255           3
 H histidine           2.4         69           2
 I isoleucine          3.1         91           2
 K lysine              2.0         59           3
 L leucine            10.3        302           9
 M methionine          0.9         27           1
 N asparagine          4.0        116           2
 P proline             7.6        221           4
 Q glutamine           4.0        117           2
 R arginine            6.2        180           2
 S serine              8.1        237           3
 T threonine           6.4        188           3
 V valine              7.2        210           3
 W tryptophan          0.9         27           2
 Y tyrosine            2.8         81           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cadherin EGF LAG seven-pass G-type receptor 2 
CELSR1                0.553   cadherin EGF LAG seven-pass G-type receptor 1 
CELSR3                0.495   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
FAT4                  0.097   FAT tumor suppressor homolog 4 
FAT1                  0.079   FAT tumor suppressor 1 precursor 
FAT3                  0.076   FAT tumor suppressor homolog 3 
CDH23                 0.070   cadherin-like 23 isoform 1 precursor 
DCHS1                 0.067   dachsous 1 precursor 
FAT2                  0.064   FAT tumor suppressor 2 precursor 
DCHS2                 0.063   dachsous 2 isoform 1 
DCHS2                 0.052   dachsous 2 isoform 2 
PCDH11Y               0.048   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.048   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.048   protocadherin 11 Y-linked isoform a 
PCDH1                 0.048   protocadherin 1 isoform 2 precursor 
PCDH1                 0.048   protocadherin 1 isoform 1 precursor 
PCDH11X               0.048   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.048   protocadherin 11 X-linked isoform d 
PCDH11X               0.048   protocadherin 11 X-linked isoform c 
PCDH11X               0.048   protocadherin 11 X-linked isoform b precursor 
PCDH9                 0.045   protocadherin 9 isoform 2 precursor 
PCDH9                 0.045   protocadherin 9 isoform 1 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.045   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.045   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.045   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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