Guide to the Human Genome
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Name: LOC100131696 Sequence: fasta or formatted (517aa) NCBI GI: 169212026
Description:

PREDICTED: keratin associated protein

Referenced in:

Keratins

Other entries for this name:
alt prot [517aa] PREDICTED: keratin associated protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         26           4
 C cysteine           18.4         95           2
 D aspartate           1.5          8           1
 E glutamate           4.8         25           2
 F phenylalanine       1.0          5           1
 G glycine             1.9         10           2
 H histidine           0.0          0           0
 I isoleucine          3.1         16           1
 K lysine              1.9         10           2
 L leucine             2.7         14           2
 M methionine          0.4          2           1
 N asparagine          0.6          3           1
 P proline            13.7         71           2
 Q glutamine           5.2         27           1
 R arginine            4.1         21           2
 S serine             18.4         95           3
 T threonine           6.2         32           2
 V valine              8.7         45           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: keratin associated protein 
LOC100131696          0.994   PREDICTED: keratin associated protein 
LOC100288060          0.994   PREDICTED: hypothetical protein XP_002343557 
KRTAP10-4             0.230   keratin associated protein 10-4 
KRTAP10-6             0.208   keratin associated protein 10-6 
KRTAP10-7             0.207   keratin associated protein 10-7 
KRTAP10-1             0.181   keratin associated protein 10-1 
KRTAP10-9             0.180   keratin associated protein 10-9 
KRTAP10-11            0.173   keratin associated protein 10-11 
KRTAP4-8              0.169   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.169   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.168   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.168   keratin associated protein 4-9 
KRTAP4-12             0.162   keratin associated protein 4-12 
KRTAP10-2             0.158   keratin associated protein 10-2 
KRTAP10-5             0.154   keratin associated protein 10-5 
KRTAP4-3              0.153   keratin associated protein 4-3 
KRTAP4-8              0.153   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.153   PREDICTED: similar to keratin associated protein 4-...
KRTAP10-12            0.152   keratin associated protein 10-12 
KRTAP4-9              0.149   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-8              0.148   PREDICTED: keratin associated protein 4-8 
KRTAP4-11             0.146   keratin associated protein 4-11 
KRTAP4-5              0.145   keratin associated protein 4-5 
KRTAP10-8             0.143   keratin associated protein 10-8 
KRTAP4-8              0.141   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.141   PREDICTED: similar to keratin associated protein 4-...
LOC728318             0.135   PREDICTED: hypothetical protein 
LOC728318             0.135   PREDICTED: hypothetical protein 
LOC728318             0.133   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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